<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28696

Description Piso0_001398 protein
SequenceMSADYWSSSQRMKWQFNRQTLLDYRRKLLILERKMIQSGLIKDYQYVNYDWNMRIYLHNVIVKLGRRLNIRQVVLATAEVYLTRFLTKVSVKEVNVYLLVAACVYASCKIEECPQHIRLILSEARSLWPEYIPHDTAKLAEFEFYLLEEMNLYLILHHPYRSLLQIQTFLKENYDTYAFVLTDDELQNSWSLISDSYITDLHLLYPPHIIAITVIYITIVLKKNSSSLKSNGNSIDADVNEKPQSGSIESQNDPSAMEIEDLMTLSSSNPQEEPLAQPVPGATQLEVKSLSKIDQDTIRINKFMKFLNHSHINLDEVAESIQDMVNLYVVWNHYNENLVKKSLHRMLTNS
Length350
PositionKinase
OrganismPichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) (Hybrid yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Millerozyma.
Aromaticity0.10
Grand average of hydropathy-0.233
Instability index53.68
Isoelectric point6.01
Molecular weight40887.47
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28696
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.62|      12|      18|     222|     239|       1
---------------------------------------------------------------------------
  222-  233 (19.64/22.08)	KKNSSSLKSNGN
  242-  253 (20.98/ 7.11)	KPQSGSIESQND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.68|      18|      21|      64|      81|       2
---------------------------------------------------------------------------
   64-   81 (29.74/19.33)	LGR...RLNIRQV...VLATAEVY
   82-  105 (18.93/10.24)	LTRfltKVSVKEVnvyLLVAACVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.06|      14|      21|     311|     324|       3
---------------------------------------------------------------------------
  311-  324 (23.90/17.63)	HINLDEVAESIQDM
  333-  346 (25.16/18.94)	HYNENLVKKSLHRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.32|      20|      21|     134|     153|       4
---------------------------------------------------------------------------
  134-  153 (34.09/21.55)	HDTAK.LAEFEFYLLEEMNLY
  157-  177 (32.23/20.03)	HHPYRsLLQIQTFLKENYDTY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28696 with CycC domain of Kingdom Fungi
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