<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28693

Description Piso0_001398 protein
SequenceMSADYWSSSQRTKWQFNRQTLLDYRRKLLILERKMIHSGLIKDYPYVNYDWNMRIYLHNLIVKLGRRLNIRQVVLATAEVYLTRFLTKVSVKEVNVYLLVAACVYASCKIEECPQHIRLIVSEARSLWPEYIPHDTAKLAEFEFYLLEEMNLYLILHHPYRSLLQIQTFLKENYDTYAFVLTDDELQNSWSLISDSYITDLHLLYPPHIIAITVIYITIVLKKNSSSLKSNGNSVSIGADVNEKPQSGAIDSQNDPSAMEIEDLMTLSSSNPQEEPLAQTVSGATQLEVKSLSKIDRDTIRINKFMKFLNHSHINLDEVAESIQDMVNLYVVWNHYNENLVKKSLHRMLTNT
Length352
PositionKinase
OrganismPichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) (Hybrid yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Millerozyma.
Aromaticity0.10
Grand average of hydropathy-0.205
Instability index47.93
Isoelectric point6.32
Molecular weight40969.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28693
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.11|      13|      15|      68|      82|       2
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   68-   82 (15.63/16.52)	LNirQVVLATAEVYL
   86-   98 (20.47/13.18)	LT..KVSVKEVNVYL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28693 with CycC domain of Kingdom Fungi
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