<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28691
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MNGATEWNSKEIREKAMENTNIQSISKPRSLEGRTISWSKNGFIAFSPLESELKNKVFLTYLENVDGNSWRLAKPQEIKLRSSVDTQFRPEISLLSWSNMSTDLAVSDIHGNLYIMLAGVGIVNPKDRGENGYTTSNGTGNGGQTKGNSGGPQGTSAAHMPSYELTSYNHMEMIYRDLSSQSTGQYVHSSQIIEIRWLNIAKPLIVKRPATLKYIENNQHKSASPFVYTYSVSQHEQIGSCHPIPTKQACVTVRQNGDLSLYYQGEHKVEYHKISDRLSFGEKTAYIEMASVGFSKNNEIIITAHDKVTDKIRVFRAHIDWGYLVQSAKKQKIDPHYHTPEKEQVPLTLKVEVLCESSVLPSICSTSQNDTDTNDDIMAIDSPPTSHKFQKLSSIDLISPSVGFDSELDILITYETWSDATQLNTEIYRYNLVASSDYISSAFDNLGNKSAGKEKDTNAVQDFRLLLRDKMARNGKIQRIEYTQAEHFLLLLYEKGKVDVIDRKDMTVINEKGVSKSKENPPPQISSLFDIGFNFPDIENATDSLVYAISPNLTSLVYICPHLSPNDLKLKVLTKGSDQGITPKEMFITSVGFAFRHSHACYTNTNEDDLIALAQTEIKRVRSELHKSTMSKPLNIDIILKKFIESIICETHKAVNFNLDSFGKDSIDKLLSSPPLQKLLSFQLILGGLQTTNYIMSDIAWTILNLRSASFGIMFSLSSIYRQISKKKPNEDTLQDSITRGEYLISLIGNVQWLLDFMIYLNQELLHLSHSLQNPGQSSLSVSNSLVLPLILSKVPRLFLIYALNSIGKTNEILKKLNKDLTESNKNFSPMKQALGRYFTLFNSTPLNLSFFENFLKEADTFITKELFQIASSKDKGYQLKLEQKLVCEGEIIEELIPVAKMVIARHARTMNRDIRISDIYFYDTDWLQVGYNSLRNTEKTIEWEKETILNDKSANEPVKPILQLNKTEYIDALRKIIISIEQRSPSMKTVKYRRCLRCRALSLTNDPLVFGVERNIGLWTMVFQRSCICGSSWVNCEA |
Length | 1039 |
Position | Tail |
Organism | Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) (Hybrid yeast) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Millerozyma.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.340 |
Instability index | 41.39 |
Isoelectric point | 7.56 |
Molecular weight | 117640.83 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP28691
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 136.55| 42| 166| 639| 682| 1
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300- 347 (34.68/18.52) ................IIITAHDKVTDKIRVF.RAHIDwgYLVQ..SAK....KQKIdphyhtpekeqVPL
348- 394 (34.99/19.37) TLK..VEvlcessvlPSICSTSQN........DTDTND..DIMAidSPPtshkFQKL...........SS.
639- 682 (66.88/50.69) ILKkfIE........SIICETHKAVNFNLDSFGKDSID..KLLS..SPP....LQKL...........LSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.07| 24| 405| 429| 457| 2
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429- 457 (36.57/28.64) RY.NLVASSDYISSAFDNLgnksaGKEKDT
837- 861 (39.50/20.51) RYfTLFNSTPLNLSFFENF.....LKEADT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 146.87| 51| 285| 581| 638| 7
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581- 638 (76.91/80.07) ITpKEMF.ITSV...GFAFR..HSHACYTNTNEdDLIALAQTEIKRvrselHKSTMSKPLNI.DI
863- 920 (69.96/50.95) IT.KELFqIASSkdkGYQLKleQKLVCEGEIIE.ELIPVAKMVIAR.....HARTMNRDIRIsDI
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