<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28688
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSGVENNTLKKLVKGAIRQNLSGNAFIELFNELNDRLSINEHEIQEVLLELSDNVSRRAENQHKVNYSLTLMTWSTPLLNTFWKLFDGLTLYSQSQYVIQLSNMFMERSKADRIPIEIKQELIRLHVPRYTESFISSISNFDTLDHDHLSLFNHILMLWTAIIKKYKSLIDDTIFKDLSSKITAALQKFDLKNMLTYFNASLASFSQSTFTSLQSDAIDGDFKISFLKGNSASQIARGVTSFNANSKKFLHLNQEKAFLWANTVMRSWQFDVDYFLTVFESHFFVRSHSGTQKQFNFCVDLISLIFKGLVNAVHSHEPNYVLMNWRIFLVSKLPIMLKKNISKFTNTGLDLEGIAKQSRLEEAILSSFNSLGEKPMKTISAFSINTSKAIDLRQEFLKSCIYHCVLPVSSFHRFFPMESLITPEHLQDAVDHFDDVKSVSDEIIPKITETNSDISSLEEQGFFSLLESIAEKLTHSSSKMQQFADQVNGAIAKLIEGKDTEKLSRLLLAITYNYELLHLICFNTKKGPVQIVEPLINYIDSYDMNVDEDDNFQDTYSYFGNILLGTILIIEIFQADVSKFQTSSFTINYMNNFYLRLCDNYSDKCDTSNGEEEEIVNNHKELLGDWVKTLFDENNDGLSDDLIKSVGIKKIHKIVPIVYSQSVTATISGKIDFQVLNNGLDYLTQVFLVPSCLSFISWLLRKAIIIGPDRENVPLKTIHSLLKQNLEQVEEQNNEAKLIFLMVLKTKGSDIIGSLKRFERWENNSTVQEIVNITQKSIGNFLQPAVDINLNDDINLYEEFGNAIINLVVKEEKNYRLAFDLFRIIGVEKLIEYIIDSIITYQYSITGSEDVKIFINVAIFLISLSSIGSDKEKWLEYISSQTVEFKTLSPSDSAFTAPFGLHYSSILEETNQPRSFADDLFSDEMNKADSTVSSVDLVLSNIKNVLSPLLMFRDIEESSNKSSVLKATDVFREIFMYNINAI |
Length | 982 |
Position | Tail |
Organism | Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) (Hybrid yeast) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Millerozyma.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.101 |
Instability index | 36.67 |
Isoelectric point | 5.19 |
Molecular weight | 112167.57 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP28688
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.53| 16| 20| 940| 955| 1
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940- 955 (28.12/18.65) SNIKNVLSPLLMFRDI
959- 974 (26.42/17.08) SNKSSVLKATDVFREI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.44| 11| 20| 28| 38| 2
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28- 38 (18.93/ 9.91) ELFNELNDRLS
46- 56 (17.52/ 8.65) EVLLELSDNVS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.66| 20| 20| 833| 852| 3
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833- 852 (33.85/21.04) YIIDSIITYQYSITGSEDVK
854- 873 (31.81/19.33) FINVAIFLISLSSIGSDKEK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.91| 12| 21| 689| 702| 4
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689- 702 (17.78/15.74) VPscLSFISWLLRK
713- 724 (21.13/10.63) VP..LKTIHSLLKQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 91.56| 21| 22| 160| 180| 5
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138- 157 (18.50/ 8.28) ...ISNF..DTLDHDhlSLFN.HILM
160- 180 (32.89/21.49) TAIIKKY..KSLIDD..TIFK.DLSS
183- 204 (19.80/ 9.48) TAALQKFdlKNML....TYFNaSLAS
206- 222 (20.36/ 9.99) SQ..STF..TSLQSD..AIDG.DF..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 110.20| 40| 48| 408| 449| 6
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408- 449 (66.26/56.14) VSSFHR..FFP.MESLItpEHLQDA...VDHF.DDVKSVSDEIIP.KITE
454- 501 (43.94/29.25) ISSLEEqgFFSlLESIA..EKLTHSsskMQQFaDQVNGAIAKLIEgKDTE
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