<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28656
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MVREVDSICKLITNCASRHVSPKQFTNFYNMFFNEQYDSVIESQGDNEAKPPIEPVYEAISQGLLKVLNDGKYNLVADYVVEIVFVNYNSELLKIFLPKLHLVKNQLVLIHFFSRSTGFMRNLTNKLISDQISNDIYSDILPSILSFNFSELGDELITIITKFLHTVLKISESPAKIQDENIRNNGNLLLQRLSKCNKLLYKRLFNDLDPKFQAGEPSSSVGTFALPPSTIPSPSVTSPKYESITVGVTKQPSLAPNELKYQDVKLTRYYKNLWLNNKIHYFTVSDPDFLNKYESIGELTKTSGSPQIERSSQTNVADLIETTFTCFAQFVSNKLYHQLNSNFSLLERKWTIFITKQLPLIIKQSIPNEPQLVLHALENIDDKVVKAIKSYNTEKDEVKNRTEDLFDDYPVNNLDIRHEFLKNLIMLGLQPPNVLNEYLREDQMVDLKSLVTSEHLVIENSQCVKESILDIKGFMKRSIETLDFESMFDDSNQLVIGTDNGLLQLAHNLESVAPTKQQEISNIIYDVLRKAVEDFDHKSISKILTLLTLNIGHLLTNILCFIGPEKLLGPVVTFIDVIWEPNGNKLNDVISEDSEFENLSAFMAYTLSMAFIIHMVKTYNVNLESLVEIPSKSTVLNFISKLGDIQETFSDEGNPDASKNMLQLWLRDLFINNSISDPLMKTADVKVLGTMIPFIFKQSLVNVETGLISDVSNFVNGFEYFLQPFMSIGLLNIFFWLEQHLISLKTDDSFLQIGGKIFDLLNAIIAPKGMNPDAKAVHYVILKLNCINLLKELKSFQVSNESNYGMYSSQYQQDPKLDSLISKLESVAQSSNIYDIDPRITTATGNSYSQKQISYNKLTMTSDLPINKIMTNQINSFWNLHSSTYYNFDYLLELTNLVTPAQFLHDVFESLKYKVSTYGIPGSVNRPPATALDHVLSYLFYFMVLRDIKNPEEKSALLEYLETGKFSSAIIRNKIKTDSSSILGSSAPQADNKSDQDPVDAADEDFDMLFGESFSGLPDESQKPNDIKHESGLKDENSETLEPRVSLVRLTESFGFAYFMMMKDTKEAYDAGQETEPRYENFINLYNRYVETLKISVI |
Length | 1098 |
Position | Tail |
Organism | Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) (Yeast) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Eremothecium.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.200 |
Instability index | 42.49 |
Isoelectric point | 5.03 |
Molecular weight | 124933.96 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | histone H3 acetylation GO:0043966 IEA:EnsemblFungi
regulation of transcription by RNA polymerase II GO:0006357 IEA:EnsemblFungi
transcription by RNA polymerase II GO:0006366 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP28656
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 436.72| 111| 114| 707| 818| 1
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590- 699 (116.00/61.56) .ISEDSEFENlsAFmA.YTLSMAFIIHMVKTYNVNLESLVEIP..SKSTVLNFISKLGDIQETF.SDEG.NPDAsKN....MLQL............WLRDL..FINNSISDPLMKTADvkvlgtmipfiFKQS......
707- 818 (183.88/105.45) LISDVSNFVN..GF.E.YFLQPFMSIGLLNIFFWLEQHLISLK..TDDSFLQIGGKIFDLLNAIIAPKGMNPDA.KAVHYVILKL.NCI.......NLLKELKsFQVSNESNYGMYSSQ...........YQQDP..KLD
820- 933 (136.84/73.93) LISKLESVAQ..SS.NiYDIDPRITTATGNSY...SQKQISYNklTMTSDLPI.NKI..MTNQINSFWNLHSST.YYNFDYLLELtNLVtpaqflhDVFESLK.YKV...STYGIPGS............VNRPPatALD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 77.28| 24| 51| 230| 256| 2
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230- 256 (34.05/33.22) TIPSPSVTSpKYESItvGVTKQPSLAP
283- 306 (43.23/28.29) TVSDPDFLN.KYESI..GELTKTSGSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.97| 48| 52| 465| 516| 3
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465- 516 (70.18/65.62) KESILDIK.GFMKRSIETLDFESMfddSNQLVIGTDN.GLLqLAHNLESVAPTK
517- 566 (71.79/51.98) QQEISNIIyDVLRKAVEDFDHKSI...SKILTLLTLNiGHL.LTNILCFIGPEK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.27| 16| 609| 415| 431| 4
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415- 430 (26.87/19.32) DIRHEFLKNLIMLGLQ
433- 448 (26.40/12.54) NVLNEYLREDQMVDLK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 116.50| 30| 239| 126| 155| 6
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126- 155 (51.08/34.32) KLISDQISNDIYSDILPSILSFNFSELGDE
331- 349 (24.15/11.80) ......VSNKLYHQ.....LNSNFSLLERK
371- 397 (41.26/26.11) QLVLHALEN.IDDKVVKAIKSYN.TE.KDE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.83| 13| 115| 937| 949| 7
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937- 949 (25.66/15.61) SYLF.YFMVLRDIK
1053- 1066 (23.17/13.40) SFGFaYFMMMKDTK
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