<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28642

Description Uncharacterized protein
SequenceMATVEEILSAKLTLEELKEKLANNDESKSAISGQIQLVKHNVLPLRLSFNDFLKTMSQIEHLNDKSPQEKFLLIRAKVLELYGKLKELVRDFQKLMPLLDTMAVFSESNEQKFYPLETLNLLPDPIKSTASPSYKKAVNKSNAETPSSNAATPSAALSSNNVVLVGPQAKNQRRPRTNNKRQPSGTASAAPSAGSAGSAPISGATPMMISGVSPLNMVASPLNGISPNRKPQQPHHQTTPTAATLSIHSSQQKQIAMQGKGTPSKTPVLSAANLTPQSILTMSAFENNANSIPTSTLSINSGPNQATMGFSADLDNLDLNALELGSLNMDLLG
Length333
PositionTail
OrganismEremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Eremothecium.
Aromaticity0.03
Grand average of hydropathy-0.347
Instability index44.39
Isoelectric point9.26
Molecular weight35577.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28642
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.80|      16|      16|     272|     287|       1
---------------------------------------------------------------------------
  272-  287 (27.74/15.85)	ANLTPQSILTMSAFEN
  289-  304 (28.06/16.11)	ANSIPTSTLSINSGPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      16|      93|     107|       2
---------------------------------------------------------------------------
   93-  107 (20.47/15.99)	QKLMPlLDTMAVFSE
  111-  124 (25.53/15.26)	QKFYP.LETLNLLPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.17|      32|      86|     125|     158|       3
---------------------------------------------------------------------------
  125-  158 (45.72/28.74)	PIKSTASPSYKKAVNKsNAETPsSNAATPSAA.LS
  214-  246 (55.45/27.31)	PLNMVASPLNGISPNR.KPQQP.HHQTTPTAAtLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28642 with Med3 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPSYKKAVNKSNAETPSSNAATPSAALSSNNVVLVGPQAKNQRRPRTNNKRQPSGTASAAPSAGSAGSAPISGATPMMISGVSPLNMVASPLNGISPNRKPQQPHHQTTPTAATLSIHSSQQKQIAMQGKGTPSKTPVLSAAN
130
273










Molecular Recognition Features






MoRF SequenceStartStop




NANANA