<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28640
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MIELGNQAVSWSKTGLIVYSDKTSTDSNLCMTFLETINGTTWRFHPPKKYTIHPHLYESQNTTSSSNSNGGKYSINAGRSGSPPNYQGSKANRTTNKNCPFFYEITSVHWNNWFNLPGDMLAVCDELGNLTILILGQSLQGPVTMDKLTMLFQDNIYKIHNNPMQLNETSEDSVKCVKKESKKEYPTRISELFWLSSSKPVISSQFCVLDSSINSYRNKVQQIPPYGVFHPPFMKYSCLAVRKNGQIDFWYQFSNSKSHKKISLHLNTAQGKSSNDMDWVEYTNISALNEDQSLLISTYSRLTKVVSFYKLHVNWNITDINNSQLNDPLLSLFHLSDVAVEQIDDEGNLLEFQYLYVISKAPVEKDSAPEILLLYNVLDTGKSIIKRYKLIPTQLNAHYLKILKPDISRLDEQKLKPKHRYTLNCMPEIHLDKKVINIISNILDGFVSIHFEDSTIETYSKTDWKVETERLHHQNRQGKFRDILTSVLSAGFNYPKLPPQSTLEWAIVSPTMCGVLIKQSCKDIPQFISISHENTDDASLDKVNSTAFAFAFVASIHRQLSAEDLSIACKTHLIKISDKDQDRGKECITSLMADIYSFFNITPDAPPELLEKMISSRPVQKTMLLQLELGSSCRHKNVYEMARIIMNLRNVYFAFNGVTRNLQFAIEQLNTISPAQLAGGKLFQTSFTKQDLIHSLIPIAKWLIKFITYLIQEVLILINKGYSSASVSSLVYGVFGARIPRSLLLSILNEIKRVIHLVTKFPENNYPVLNESSKFLKKILSESTVNIEKFETFLVDVNTKFMNLNSKNQSTTREPSLLVKAEIPEDISKISSFLLTYSKNAIISHIDPAQVYFADTSGLRISKDEIFQSSLLHLSQPLDKGLVTDTKSLGPSHQTSRSFSKIEYDGVSYDTFTDNEMTNGSLKRCCRCGCVTRAGYTISEDKTIISTSIKTRRWPTMYARVCICSGYLYELEKAHPEKKESK |
Length | 982 |
Position | Tail |
Organism | Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) (Yeast) (Fabospora phaffii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Tetrapisispora.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.291 |
Instability index | 42.98 |
Isoelectric point | 8.63 |
Molecular weight | 111554.40 |
Publications | PubMed=22123960
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | RNA polymerase II activating transcription factor binding GO:0001102 IEA:EnsemblFungi
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
regulation of establishment of protein localization to chromosome GO:0070202 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP28640
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 86.53| 27| 183| 673| 704| 2
---------------------------------------------------------------------------
673- 704 (41.22/31.32) SPAQLAGGKLFQTSftkqdLIHSLIPIAKWLI
857- 883 (45.31/23.73) SGLRISKDEIFQSS.....LLHLSQPLDKGLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 226.02| 56| 183| 262| 317| 3
---------------------------------------------------------------------------
52- 113 (76.78/40.45) IHPHLYESQNtTSSSNSNGG..KYSiNAGRSGSPPNYQ.GSKANRTTnkNCP..FFYEItSVHWNnW
114- 162 (52.12/25.34) FNL.....PG.....DMLAVcdELG.NLTILILGQSLQgPVTMDKLT..MLFqdNIYKI.HNN....
262- 317 (97.13/52.92) ISLHLNTAQG.KSSNDMDWV..EYT.NISALNEDQSLL.ISTYSRLT..KVV..SFYKL.HVNWN.I
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 139.08| 45| 57| 473| 523| 4
---------------------------------------------------------------------------
473- 523 (71.87/58.39) HQNRQGKFrdiLTSVLSAGFNY...PKLPPQ.STLEWAIVSPTMcgvLIKQSCKD
532- 580 (67.21/39.40) HENTDDAS...LDKVNSTAFAFafvASIHRQlSAEDLSIACKTH...LIKISDKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.65| 20| 55| 369| 388| 5
---------------------------------------------------------------------------
369- 388 (36.54/21.03) PEILL.......LYNVLDTGKSI......IKRY
427- 459 (24.10/11.66) PEIHLdkkviniISNILDGFVSIhfedstIETY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.05| 14| 610| 354| 367| 13
---------------------------------------------------------------------------
354- 367 (25.72/18.85) YLYVISKA.PVEKDS
967- 981 (21.33/14.28) YLYELEKAhPEKKES
---------------------------------------------------------------------------
|