<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28618

Description Uncharacterized protein
SequenceMSASYWTSTQRFQWQHTKESLDKERQKLWILEYQLFPQGLNIVIDPKPNNLNLDSATKNPGNNVSLSGNMNVPVTKNIPISHRDLHYDKDFNLRIYCYFLIMKLGRRLNIRQCALATAQIYLSRFLIKVSIREINLYLLVTTCVYLACKVEECPQYIRTLVSEARSLWPEFIPPDPTKITEFEFYLIEELESYLIVHHSYTSMEQIINILNDKKYNLVISSEDIQNCWSLINDSYISDVHLLYPPHVIAMACLFITICIRGKVSKSSLNGTQSSTNSLKINNDNYNNSLNIDRRSHSIFNRFMAESHVDLDEVMDTIQELITLYDHWDKYHESWIKFLLHTLYLRPNRVNQPHASITPDNL
Length361
PositionKinase
OrganismTetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) (Yeast) (Fabospora phaffii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Tetrapisispora.
Aromaticity0.11
Grand average of hydropathy-0.271
Instability index44.83
Isoelectric point6.50
Molecular weight42316.98
Publications
PubMed=22123960

Function

Annotated function
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi
GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi
GO - Biological Process
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
positive regulation of transcription by galactose	GO:0000411	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle	GO:0010673	IEA:EnsemblFungi

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP28618
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.80|      19|     101|     126|     167|       1
---------------------------------------------------------------------------
  128-  146 (31.50/64.26)	KVSIREINLYLLVTTCVYL
  176-  194 (32.30/ 6.68)	PTKITEFEFYLIEELESYL
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP28618 with CycC domain of Kingdom Fungi

Intrinsically Disordered Regions

IDR SequenceStartStop
NANANA

Molecular Recognition Features

MoRF SequenceStartStop
1) KLWILEY
27
33