<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28616

Description Uncharacterized protein
SequenceMAKSTPALATMSSAMLPPTPNDGESTKYRNKVTQCFDDILDVSTQMLVQQQLKTIQLDINVTNGFNLSQQKILHEKVNLFHSLLDDLECTLETSKTFTEHIAKLGKQREEEKLKKDKEREEELERTRKRLEDEEQKAKEKAEQEEKKKTEEEHVQSQKVGNIDNESQLLNFNSSNDIESTDKLDFLVDTPSNLLADFPTKNDDLINSFAETASNKNNKIEEKVNEDKMESNKAASEENKLTSATPADNGNTNNMGASTFDNSNPIDMSMFSGLDGNGFDLGNFGSLDTPSLVTEPTAPEVKHNDSNNVNENAEKMIDQLNVENENVEKNDKSDTNTNNDNNTIGDNTDDYLTLNDFNDLNIDWNANGDPEDIDLNIFNI
Length379
PositionTail
OrganismTetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) (Yeast) (Fabospora phaffii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Tetrapisispora.
Aromaticity0.04
Grand average of hydropathy-1.026
Instability index44.83
Isoelectric point4.37
Molecular weight42611.87
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.84|      20|      20|     184|     203|       1
---------------------------------------------------------------------------
  184-  203 (35.60/16.62)	DFLVDTPSNLLADFPTK.NDD
  206-  226 (26.24/10.52)	NSFAETASNKNNKIEEKvNED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.59|      18|      18|     108|     125|       2
---------------------------------------------------------------------------
   88-  103 (19.61/ 8.23)	..ECTLETSKTFTEHIAK
  108-  125 (27.05/13.60)	REEEKLKKDKEREEELER
  129-  146 (26.93/13.51)	RLEDEEQKAKEKAEQEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.03|      20|      24|     333|     356|       3
---------------------------------------------------------------------------
  333-  356 (27.76/24.14)	DTNTnnDNNTIGDNTDdyLTLNDF
  358-  377 (39.27/19.60)	DLNI..DWNANGDPED..IDLNIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.29|      16|      16|     245|     260|       5
---------------------------------------------------------------------------
  245-  260 (29.22/15.70)	PADNGNTNNMGASTFD
  264-  279 (30.07/16.34)	PIDMSMFSGLDGNGFD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28616 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GNFGSLDTPSLVTEPTAPEVKHNDSNNVNENAEKMIDQLNVENENVEKNDKSDTNTNNDNNTIGDNTDD
2) HIAKLGKQREEEKLKKDKEREEELERTRKRLEDEEQKAKEKAEQEEKKKTEEEHVQSQKVGNIDNESQLLNFNSSN
3) VDTPSNLLADFPTKNDDLINSFAETASNKNNKIEEKVNEDKMESNKAASEENKLTSATPADNGNTNNMGASTFDNSNPIDMS
281
100
187
349
175
268










Molecular Recognition Features






MoRF SequenceStartStop




1) IDLNIFNI
2) KLDFLV
3) LNDFNDLNIDW
372
182
353
379
187
363