<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28598

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMNHTPVPSTPTAPVQSDFSQIPLDALESIRNRLNQIHVSLRKLSDQINAHNRHPTKIKLPTFTHFQNQFQVLITQLTSIANILYNNEELLLRTNVYPTINFPTSQHEGLLTTLLRKKALPEVDEWINSSITTIEKLQEKGPVDFEKEDEYVAWSLMKLQELREEFQFYGFHTIEESKYMETSEGKAEAKLKKEEENAREAAESKITRGGKKGLHPNQVMKFLCQGQL
Length227
PositionHead
OrganismCandida parapsilosis (strain CDC 317 / ATCC MYA-4646) (Yeast) (Monilia parapsilosis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Candida/Lodderomyces clade> Candida.
Aromaticity0.07
Grand average of hydropathy-0.633
Instability index42.08
Isoelectric point6.26
Molecular weight26172.42
Publications
PubMed=19465905
PubMed=22192698

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28598
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.85|      12|      17|     174|     185|       1
---------------------------------------------------------------------------
  174-  185 (20.81/17.78)	EESKYMETSEGK
  193-  204 (19.05/15.64)	EEENAREAAESK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.26|      21|      22|     110|     130|       2
---------------------------------------------------------------------------
   90-  107 (22.60/11.94)	...LLRTNV..YPTINFPTSQHE
  110-  130 (32.23/19.70)	LTTLLRKKA..LPEVDEWINSSI
  133-  155 (27.43/15.83)	IEKLQEKGPvdFEKEDEYVAWSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.66|      18|      48|      15|      33|       3
---------------------------------------------------------------------------
   15-   33 (27.15/23.07)	QSDFsQIPLDALESIRNRL
   66-   83 (30.51/20.72)	QNQF.QVLITQLTSIANIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28598 with Med8 domain of Kingdom Fungi
Unable to open file!