Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MDFPGGSITNIRAIDGFSHIYWRIYTDDPGESPSNGYAILKHLSRLKDLELQLRDRNCLVSSYPRRLCLWVFSATPGFESLSPLSPNDGRDDSGRLAIGSATLKVSSSGNVSAVDLVKNLSTETQNASGSAGSQRPNAMTPFATIYASFISAVSGAVSLQLVRQRNAIPLGSRTLFTVVEKDGCDNSHVSKNDLALAPSLTTLQIQLTSAGKLTVALQTVSQAGLTRLLTPEEVPASIHDTPPGTDLWLSPSGSIARLVAANPPQLNAGSPYPSNVGGSGNEKSSPATRKQWKVNVLWWLSNFGLPVDGIDDEAWVEVEVWEPFYSRLAGEVWRPSEEGASMLPLKRILWPAIYCFRRTKSASSEFYGEMEGVSSIAGDPLDFAEKWRVTEKLSFAEASPKPPSVHQEAPTKDQDASSPDLLNLPEGIESLSRASQYPDLQTASLVYPTPPDGAAATGLNPLVTSDTFTDDIEQNSNFMQQDRLNHHRQLSKERTGTDVISFGPSAGLVVGSGLYDTNDDDDLFGDMNEKDFGTKGITDADFSFFDDPDFDRGGVGEQAEAIQELSGFMDTDEPEIQATVDGQASPEQTPAMNIASAQLSPVVATADMQPEKTPQEAKAPVFTPQEDKPRTISPPLSPVEVKKILFPESQLESQRPAKKGQGPGYYNAVAFKQNMSLWDKKYGADGKFGFNLRGIERNKGPDTVTNDIPTVGLPRHSGKMKSSTSKDPDNYGSPYSEEMQESSSDSDMSSSVSADSDESASESGLSPATFSTRKRKRTRSNSGTSLALSQDKSTVRTGQETAAQRPEDSVFLGNFLSTFSDWSMAGYFSLAQNQVSPVLIRKDIQVQVAQLLVDQVTQSSLDHKIDGTLGLLDYADEVCSPETLQGDAAFVRGMERLDLNSFVSLQDSNALSPSSSNGANPRQSSQRRETGKGTIVKIPPPHLRVRRGKDFLETLPPAISFWETFGLEPAHGRKDILAYCIHPHFAARAADTFLERLGLVYSGCNLGEHRRGESSNVFDRGLGSWNISSSADSRYSEVIQSLKTICGVLGSAFLSTPPSKDSNIVVYIVNPFTHATSLVDICAAFWSLFQQYIAEADKQQTRQLNELVLQIIPMDFVTSAESLVVPPQAEYLNLALEVYSRCPPKSSEVGPVNCAPPVLLAEPIPRSIGFKLSSEGSSPLQEGKHLHIACSRSLDQRWLSVAWSDNFGALQRNMSYCLRYRNSVAARPLPEVRGEIWKATRDIMDTIQTRWKVIIVSTDPVDQEEVDTWTNFADQYGKARSMTLDLVILGATTPPDLHLEPPYLPIPLSMFNQQPSSTPVATPNLGGGVSSPDQFGTAPTPPGGWGAPANASTPTDTFPEVESESLLTDIYDETWGVVLSHRLNSSLHQTEYRPALASGYLLRRKGSTDGDGLYTMSVNILFARRSPSSYDTLLREILGMYRDLATLARARGTRTVQQGTLPWHVATAIKAQTLLSYAL |
Length | 1479 |
Position | Kinase |
Organism | Aspergillus kawachii (strain NBRC 4308) (White koji mold) (Aspergillus awamori var. kawachi) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.381 |
Instability index | 50.75 |
Isoelectric point | 5.06 |
Molecular weight | 161044.06 |
Publications | PubMed=22045919 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP28579 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 430.45| 189| 890| 251| 534| 1 --------------------------------------------------------------------------- 251- 534 (262.16/301.09) P..SGSIARLVAANPPqlNAGSPYPSNV..GGSGNEKSSPatrkqwkvnvlwwlsnfglpvdgiddeawvevevwepfysrlageVWRPSEEGASMLPLKrilwPAIYCFRRTKSASSEfygemEGvSSIAgdpldfaekwrvteklsfaeaspkppsvhqeaptkDQDASSPDLLNLPEGIESLS..RASQYPDLQTA..SLVYP..TPPDGAAATGLNPLV.TSDTFTDDIEQNSN...FMQQDrlNHHRQLSKERTGTDV..ISFgPSAGL.............................VVGS.GLYDTN...DDDDLFGDMNEKDFGT 547- 710 (114.29/37.32) ......................................................................................................................................................................DPDFDRGGVGEQAEAIQELSgfMDTDEPEIQATvdGQASPeqTPAMNIASAQLSPVVaTADMQPEKTPQEAKapvFTPQE..DKPRTISPPLSPVEVkkILF.PESQLesqrpakkgqgpgyynavafkqnmslwdkKYGAdGKFGFNlrgIERNKGPDTVTNDIPT 714- 787 (54.00/14.21) PrhSGKMKSSTSKDPD..NYGSPYSEEMqeSSSDSDMSSS.............................................VSADSDESASESGLS....PATFSTRKRKRTRSN.....SG.TSLA.......................................................................................................................................................................................................... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.20| 13| 27| 2| 14| 3 --------------------------------------------------------------------------- 2- 14 (25.03/13.90) DFPGGSITNIRAI 27- 39 (26.16/14.89) DDPGESPSNGYAI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 68.87| 20| 27| 73| 99| 4 --------------------------------------------------------------------------- 69- 88 (37.36/29.60) LWVFSATPGFESLSPLSPND 96- 115 (31.51/10.26) LAIGSATLKVSSSGNVSAVD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 493.72| 162| 411| 854| 1040| 5 --------------------------------------------------------------------------- 854- 1040 (246.67/137.07) DQVTQSSLDhkidgtlGLLDYADE...............VCSPETLQGDAAFVrgmeRLDLNSFvslqdsnALSPSSSNGANPRQSSQRRETGKGTIVKIPP...........PHLRVRRGKDflETLPPAIsFWETFGLEPAHgRkdiLAYCIH..PHFAARAADTFLERL......GLVYSGCNLGEHRRGESS..NVFDRGLGSW.NISSSADSRYSEVIQ 1259- 1457 (247.04/100.78) DPVDQEEVD.......TWTNFADQygkarsmtldlvilgATTPPDLHLEPPYL....PIPLSMF.......NQQPSSTPVATPNLGGGVSSPDQFGTAPTPPggwgapanastPTDTFPEVES..ESLLTDI.YDETWGVVLSH.R...LNSSLHqtEYRPALASGYLLRRKgstdgdGLYTMSVNILFARRSPSSydTLLREILGMYrDLATLARARGTRTVQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 96.99| 31| 667| 134| 169| 6 --------------------------------------------------------------------------- 134- 164 (52.41/43.42) QRPNAMTP.FATIYASFISAVSGAVSLQLVRQ 191- 222 (44.58/23.99) KNDLALAPsLTTLQIQLTSAGKLTVALQTVSQ --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) HIYWRIYT 2) VKKILF | 19 641 | 26 646 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab