<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28572
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTSSEQWGTFLQQCLLHRIDAAEFKNLTRLLMQRYPIGEAQLLDVLLETRLATGIKWDPLPPLYIDCLCKMGLVRTSTMLNSLLKHSSIHDKLPSAGGSEATAAAAAAVQGKQKRKCYTLMTDIRVVQDAMLSVSTGTASKTFAEALSIFASIVDWIQAVVAWHNSHLDTSHQTGGLMSSPDAVSLFESLGILLAALSGTAKGLEVLSADSHEALKIKLGQALSAYLPLCVEVSLPLRNRLDSLQKEFNLFGEPSSKALDVSMMENVNVNALQFEDSVMDGPVINSRAGLYVYINAMLVGRPLVDDSMLLNFLSNRYGGHYQVLIEELITASFDVLSNANYRNESSRTMFLFRSFLVNKLPTFIAAMLAASIVSLPLPMELCISHALSRLDPNTFPSFSQMFAMQSNTVLSDVRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYNKDELVSQINANPERAEQLINEIESMEGNAGAIVGAITDVMHHLCNQKETMTLKNICNSLSRRPQALDVILLFRSLKQVLQPLCALLDAWHWDEDQGESQPVYDEFGSILLLVLTFKFRYDLRPQDMGIGGSNSFVLRLLENGFCSQKLDDLSEKQNKNLGSWINALFMAEGISEETMSACSPQEFYMLVTTLFNQSLSACEAGKLDFDTLKGGFEYLLEPFLLPSLILALNWLGNHIWESESDPSIPLKALHSLISPSSISGEAKEIHRTVLNITARSLEEQLKSIRARQPDDTIKPILEALEPHLSFQRSGSTRRSELESWTAHTPGGLLASIRSTFQSLILWSTSPDMSMAPQSYTHRQFIAGIHIQGSMRVLCALIDELKLQATTSPTNTTGSSDLALDIAATMICAPLADSFAVDQNTYSPHHHIDPTNTTKEIPPRNPILTPRGALYQLHDSVPKICEKDPLRAEIIVRLWRRVNAALTPPSQLDMNNIIQNMQLGVGVGGPGQMDLDTSGAGGHEEESTINQMLDNAVAAGMDGGGGAGGMGGMGSGGLDTSIDDVLNAADMAVGNPEFLDLDMEGLF |
Length | 1035 |
Position | Tail |
Organism | Aspergillus kawachii (strain NBRC 4308) (White koji mold) (Aspergillus awamori var. kawachi) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.021 |
Instability index | 47.15 |
Isoelectric point | 5.01 |
Molecular weight | 113220.26 |
Publications | PubMed=22045919
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP28572
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 170.41| 54| 510| 413| 482| 1
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413- 466 (93.78/61.49) VRQEFLFACASHKLIPESSIERLLGENPMQTLPVGGPYNKDELVSQI.NANPERA
487- 519 (44.49/48.07) ITDVMHHLCNQKETMTLKNICNSLSRRP.QALDV.....................
892- 920 (32.13/12.90) .........................RNPILT.PRGALYQLHDSVPKIcEKDPLRA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 300.36| 78| 160| 15| 95| 4
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15- 92 (130.62/80.48) LLHRIDAAE.FKNLTRLLMQRYPIGEAQLLDVL.LETRLATGIKWDPLPPLYIDC.LCKMGLVRTSTMLNSLLKHSSIHDK
177- 253 (104.64/62.16) LMSSPDAVSlFESLGILLAA..LSGTAKGLEVLsADSHEALKIKLGQALSAYLP..LCVEVSLPLRNRLDSLQKEFNLFGE
257- 313 (65.10/40.85) ...........KALDVSMMENVNVNALQFEDSV.MDGPV...INSRAGLYVYINAmLVGRPLVDDSMLLNFL.........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 93.39| 26| 32| 954| 984| 5
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937- 957 (25.60/10.27) PSQLDM..............NNIIQNM.....qlgvGVGG
958- 997 (32.63/27.56) PGQMDLdtsGAGGHeeESTINQMLDNAvaagmdgggGAGG
998- 1023 (35.16/16.65) MGGM.....GSGGL..DTSIDDVLNAA.......dmAVGN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.42| 23| 32| 817| 841| 6
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817- 841 (36.70/32.64) IHIQGSMrvLCA.LIDELKL.QATTSP
852- 876 (32.73/21.65) LDIAATM..ICApLADSFAVdQNTYSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.92| 17| 34| 733| 749| 7
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733- 749 (29.10/16.58) QLKSIRARQPDDTIKPI
769- 785 (29.81/17.15) ELESWTAHTPGGLLASI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.92| 22| 141| 530| 551| 10
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530- 551 (44.66/22.38) LQP..LCALLDAWHWDED...QGESQP
669- 695 (30.26/13.16) LEPflLPSLILALNWLGNhiwESESDP
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