<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28565
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSDHREAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSATPRPVDEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNQGKVSCLCVHVAGGAPWQVGAALQQAGAPCTWSCVAGPLWAQDRTALLPTGALAGASATALWGDPASCPQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVXXXXXXXXXXXXXQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARAPGQPKIDHLRRLHLGACPTEECKACTRCGCVTMLKSPNRTTAVKQWEQRWIKNCLAVEGHGPEACVTSRAAGEAPAFVQLGPWPTHRPPGTPRSLDHPHPEDRL |
Length | 875 |
Position | Tail |
Organism | Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini>
Cercopithecidae> Cercopithecinae> Macaca.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.009 |
Instability index | 48.33 |
Isoelectric point | 7.83 |
Molecular weight | 93915.69 |
Publications | PubMed=22002653
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP28565
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.04| 13| 296| 564| 578| 1
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564- 578 (22.71/18.47) PHFLNTPDksPGDRL
863- 875 (27.33/15.59) PRSLDHPH..PEDRL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.64| 16| 21| 459| 476| 2
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459- 476 (26.87/20.47) VAGgaP.W.QVGAALQQAGA
483- 500 (23.76/11.31) VAG..PlWaQDRTALLPTGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 322.40| 104| 200| 1| 136| 3
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22- 136 (177.25/152.68) EKWSKSTHCPSVPLACAWSCRNLIAFTMD.......LRSDDQDLTrmihilDTEHPWDLHsipSDHREAITCLEW...DQSGSRLL..SADADGQIKCWSM.ADHL.ANSWESSVGSLVeGD..PIVaLSW
157- 233 (93.72/41.62) EKFSRVKFSPSLTLFGGKPMEGWIAVTVSglvtvslLKPSGQVLT......STESLCRLR...G..RVALADIAF....TGGGNIV..VATADG.....................................
275- 339 (51.43/16.63) ................................................................DKFPAITHLKFlarDMSEQVLLcaSSQTSSIVECWSLrKEGLpVNNIFQQISPVV.GDkqPTI.LKW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 102.00| 22| 32| 741| 762| 4
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719- 739 (29.03/12.07) .PS.QLL.IPSLDWLPASDGLVSR
741- 762 (39.65/18.91) QPK.QPL.RLQFGRAPTLPGSAAT
774- 797 (33.32/14.84) QPKiDHLrRLHLGACPTEECKACT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 77.64| 26| 31| 636| 663| 7
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636- 663 (42.51/34.28) LLRPG....HSFLRD.GTSLGMLRELMVviRIW
665- 695 (35.13/21.54) LLKPSclpvYTATSDtQDSMSLLFRLLT..KLW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.14| 18| 18| 342| 359| 8
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342- 359 (29.60/22.59) LSATN.DLDRVSAVAL.PKL
361- 380 (22.54/15.18) ISLTNtDLKVASDTQFyPGL
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