<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28507

Description Pre-mRNA-processing protein 40C
SequenceMSQPPLSAAETTPTSMPNSSSSSSSTPASSPAPPVSYAPHQNVNSSANSQQQQQASHSGMNPNSVVNPPFHTHTPRPAAPSFSYNFPQSAPPAFTGNQHGQSNTNMPDSVTQDFSKVPSASINLHSAPAPTSISAMAPRSDPNYRPTTLWMPTAPTFPIHPVMPGTPGTPGPPGLTKPVMIPSNPAAPSTTGFPSAAVPRQNMPTASDPNASHRGGLPYPPIPSMVAPPQGYWLQPPQMSGVLRPPFHQYPAAFPGPFPFPARGGALPAVPVPDSQPPGVTPVGAASISAPSSSNHLLRGTSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAWTAHKTEAGIVYYYNALTGQSTYDKPAGFKGEAHQVSVQPTPVSMVDLPGTDWQLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIVQSSPSALDLIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANVSDTSSDSEDEDSGPSKEECINQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKNRAEEERKEKRAAQKAAIEGFKQLLDEASEDIDDKTDSHTFRKKWGNDPRFEALDRKEREHLLNERCHFEFNWTFLNSLNFIFFVCDSHNHHPYHWITYLDF
Length711
PositionUnknown
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.08
Grand average of hydropathy-0.715
Instability index55.92
Isoelectric point6.37
Molecular weight76924.28
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28507
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     319.68|      46|      49|     184|     229|       1
---------------------------------------------------------------------------
    7-   40 (37.34/ 8.63)	..............SAAetTP...TS.........MPNSSS.SSSSTPASSPAP....PVSY..APH
   41-   69 (43.49/11.31)	QNVNSS.ANSQ..QQ...........................QQASHSGMNP........NSVVNPP
   76-  119 (48.25/13.38)	RPAAPSfSYNF..PQSA..PPafTGN.........QHGQSN.TNMPDSVTQDFS....KVPS.....
  126-  178 (52.82/15.37)	..SAPA.PTSI...SAM..AP..RSDpnyrpttlwMPTAPTfPIHPVMPGTPGT....PGPPGLTKP
  184-  229 (87.43/30.45)	NPAAPS.TTGF..PSAA..VP..RQN.........MPTASD.PNASHRGGLPYP....PIPSMVAPP
  235-  274 (50.35/14.30)	QP..PQ.MSGVlrP......P..FHQ.........YPAA.......FPGPFPFParggALPAVPVPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.68|      14|      20|     356|     373|       2
---------------------------------------------------------------------------
  356-  373 (21.81/22.72)	QSTY....DKPagfkGEAHQ.VS
  375-  393 (19.87/ 9.23)	QPTPvsmvDLP....GTDWQlVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.96|      17|     102|     427|     448|       3
---------------------------------------------------------------------------
  417-  433 (27.18/21.77)	VAELKKKQDSDVTKDHP
  439-  455 (25.78/ 7.95)	TNVLSERGSGMVALNAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.06|      20|      20|     279|     298|       5
---------------------------------------------------------------------------
  279-  298 (33.78/20.26)	GVTPVGAASISAPSSSNHLL
  300-  319 (34.28/20.67)	GTSGVQTEVISAHTDDKHKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.42|      13|      51|     342|     354|       6
---------------------------------------------------------------------------
  342-  354 (24.76/15.92)	TEAGIVYYYNALT
  394-  406 (25.66/16.72)	TSDGKKYYYNNRT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28507 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPNEVAELKKKQDSDVTKDHPTPVPNTNVLSERGSGMVALNAPAITTGGRDAVASKPFIV
2) LIKKKLQESGAPVTSSSIPTPSVQPGSESNGSKATDSTAKSLQNDNSKDKQKDANGDANVSDTSSDSEDEDSGPSKEECINQFK
3) MSQPPLSAAETTPTSMPNSSSSSSSTPASSPAPPVSYAPHQNVNSSANSQQQQQASHSGMNPNSVVNPPFHTHTPRPAAPSFSYNFPQSAPPAFTGNQHGQSNTNMPDSVTQDFSKVPSASINLHSAPAPTSISAMAPRSDPNYRPTTLWMP
4) PARGGALPAVPVPDSQPPGVTPVGAASISAPSSSNHLLRGTSGVQTEVISAHTDDKHKLNATVTQNEDAANDQLDAW
5) PTFPIHPVMPGTPGTPGPPGLTKPVMIPSNPAAPSTTGFPSAAVPRQNMPTASDPNASHRGGLPYPPI
413
481
1
261
155
472
564
152
337
222










Molecular Recognition Features






MoRF SequenceStartStop




NANANA