<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28488

Description "Putative transferase, protein kinase RLK-Pelle-RLCK-IXb family"
SequenceMDRVQEAEENNKSSVVGLAIKGNKKSKYVVQWALDKFVHEGISIFKLIHVRAVITGVPTPMGEVLPLSQVRNDVATAFKREVEWQTNQMLLPFKSLCEQRKVHVDVVVIESDDVATAVAEEVAREAITKLVLGASSSGIFRSKHKGISAKISVCTPRFCTVYAVAKGKLSIRPSDTEIDGSIIDNTSETSFSSSSSSNYTSTSQTDSASVASCNALHSYAKETQRVRAHSSMDQTLLSTSPSLNETNHFRGQSLDLGRKNAAASSSRKSDIDHALSQASSCGSISDTESFFYEQNHAKDATRVNRLPPSNRQENINLELEKLRIELRHAQGMHAVAQSENVDASQKLNELNKRRLEESMKVKEIMAKEEMAMELANQEREKYEAAAREATYLKECAEREAAERKETEFKAIRAAKEKEKLEDALSGSTPQYRIFTWDEIVSATSSFSEDLRLGMGAYGIVYKCTLHHTTVAVKVLHSTGNCKNKQFQQELEILSRIHHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLQKNSNSPIPWFNRFQIAWEVASALSFLHSSKPQPIIHRDLKPANILLDGNLVSKIGDVGLSTILDSDELSAMYKDTAPVGTLSYIDPEYQRSGLISTKSDVYAFGLVILQLLTAKPAIALTHIVETAIDGGNLADILDPKAGSWPLQETLDIARLALGCAEMRRKDRPDLNDHVLPMLERLKEVADKAQHSASIVTIKSRPPNHFICPILQDVMDDPCVAADGYTYDRNAIEKWLEENDKSPMTNMVLPHKHLIPNYTLLSAILEWKT
Length797
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.06
Grand average of hydropathy-0.363
Instability index40.53
Isoelectric point6.07
Molecular weight88601.49
Publications
PubMed=22089132
PubMed=24767513
PubMed=30397259

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28488
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.42|      11|      39|      72|      82|       2
---------------------------------------------------------------------------
   72-   82 (19.73/11.70)	NDVATAFKREV
  112-  122 (18.69/10.75)	DDVATAVAEEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.34|      37|      56|     132|     172|       4
---------------------------------------------------------------------------
  132-  172 (54.84/47.19)	LGASSSGIFRSKHKGISAKISVCTprfcTVYAVAKGKLSIR
  191-  227 (61.50/40.24)	FSSSSSSNYTSTSQTDSASVASCN....ALHSYAKETQRVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.24|      22|      25|     367|     388|       6
---------------------------------------------------------------------------
  367-  388 (36.32/27.52)	KEEMAMELANQEREKYEA..AARE
  393-  416 (30.92/22.23)	KECAEREAAERKETEFKAirAAKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28488 with Med32 domain of Kingdom Viridiplantae
Unable to open file!