<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28478

Description "Mediator of RNA polymerase II transcription subunit 15a, putative"
SequenceMDSTAHTGQPSGSDWQEEVYQKIKAMKESYLPELNWMYQKIATKLQQHDSLPHQPKSDQIEKLKVFKMMLDRLLTFLQVSKSSISPNLKEKLGSYENQIINFINTNRPREMSSLQPGKLPPPHMHSMSQTQPQVTQRQQLHQMNDVNDMRMGQIIGVKQGILEQHIGNALAPSSGKSTVTEELMDHLIKAVSSLTPVALSAAVSDISSVISMIDRIAASASGNGSIVSVCEDLVAMTNCHL
Length241
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.04
Grand average of hydropathy-0.380
Instability index45.14
Isoelectric point6.75
Molecular weight26763.41
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28478
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.53|      15|      17|     111|     127|       1
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  113-  127 (29.39/17.37)	SLQPGKLPPPHMHSM
  129-  143 (27.14/ 9.66)	QTQPQVTQRQQLHQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.58|      13|      17|      20|      32|       2
---------------------------------------------------------------------------
   20-   32 (24.54/16.96)	YQKI..KAMKESYLP
   38-   52 (20.04/12.65)	YQKIatKLQQHDSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.35|      16|      16|     199|     214|       3
---------------------------------------------------------------------------
  199-  214 (24.01/17.12)	LSAAVSDISSVISMID
  216-  231 (24.34/17.45)	IAASASGNGSIVSVCE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28478 with Med15 domain of Kingdom Viridiplantae
Unable to open file!