<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28477

Description "Transcription cofactor, putative"
SequenceMVTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKMHLPVSGQEGLHELWKIAQRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQPPYPDSLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDELEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNKMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPKSDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPREMSSLQPGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVNDMKMRQVIGVKPGVFEQHIGNALAPSSGKSTVTEELMDRLVKAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLPQDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIEF
Length529
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.05
Grand average of hydropathy-0.586
Instability index52.80
Isoelectric point8.64
Molecular weight59251.10
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28477
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.73|      22|      22|     142|     163|       1
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  142-  163 (40.17/33.64)	PKLS..EMIQKIATKLQQHDSLPQ
  165-  188 (33.78/26.91)	PKSDelEMLKEFKMVLERLITFLQ
  255-  276 (40.05/33.52)	PELN..EMYQKIATKLQQHDSLPH
  278-  301 (31.72/24.73)	PKSDqlEKLKVFKLMLERLITFLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.87|      64|     111|     112|     222|       2
---------------------------------------------------------------------------
  112-  222 (111.97/64.45)	DSVAQTGQPNGGDWQEEIYQNIKAMKESYLpklsemiqkiatklqqhdslpqqpksdelemlkefkmvlerlitflqVSKSNISPCLKEKLGSCEKQIINCINTYRPNKMS
  225-  335 (106.90/61.27)	DSTAKTGKPSGGDWQEEVYQKIKVMKESYLpelnemyqkiatklqqhdslphqpksdqleklkvfklmlerlitflqVSKSNISPSLKEKLGSYEKQIINFINTNRPREMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.20|      19|      21|      50|      68|       3
---------------------------------------------------------------------------
   31-   44 (17.72/ 8.86)	.....QRIVNKMHLPVS.GQ
   50-   68 (33.46/22.58)	LWKIAQRFEEKIYTAAT.SQ
   72-   87 (21.01/11.73)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.26|      29|     104|     353|     382|       4
---------------------------------------------------------------------------
  353-  382 (48.04/36.75)	TQPQVTQRQQLHQmNDVN.DMKMRQVIGVKP
  460-  489 (50.22/33.13)	TNCHLQDRNFLPQ.DGVNgSRKMKRCINATP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28477 with Med15 domain of Kingdom Viridiplantae
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