<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28476

Description "Transcription cofactor, putative"
SequenceMMKSVRGVVWFNFAVNHCSRHHRSIHLPRLPPPPPPVNLYSMVTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELWKIAQRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQPPYPDSLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDELEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNKMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPKSDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPREMSSLQPGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVNDMKMRQVIGVKPGVFEQHIGNALAPSSGKSTVTEELMDRLVKAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLPQDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIEF
Length576
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.05
Grand average of hydropathy-0.566
Instability index51.82
Isoelectric point9.09
Molecular weight64735.54
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28476
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.73|      22|      22|     189|     210|       1
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  189-  210 (40.17/24.26)	PKLS..EMIQKIATKLQQHDSLPQ
  212-  235 (33.78/19.36)	PKSDelEMLKEFKMVLERLITFLQ
  302-  323 (40.05/24.17)	PELN..EMYQKIATKLQQHDSLPH
  325-  348 (31.72/17.77)	PKSDqlEKLKVFKLMLERLITFLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.04|      65|     112|     159|     270|       2
---------------------------------------------------------------------------
  159-  270 (114.03/77.60)	DSVAQTGQPNGGDWQEEIYQNIKAMKESYLpklsemiqkiatklqqhdslpqqpksdelemlkefkmvlerlitflqVSKSNISPCLKEKLGSCEKQIINCINTYRPNKMSS
  272-  383 (109.01/73.90)	DSTAKTGKPSGGDWQEEVYQKIKVMKESYLpelnemyqkiatklqqhdslphqpksdqleklkvfklmlerlitflqVSKSNISPSLKEKLGSYEKQIINFINTNRPREMSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     289.98|      96|     357|      29|     137|       3
---------------------------------------------------------------------------
   29-  137 (154.35/120.24)	RLPPPpppvNLYSMVTNNWRPNQGAE.PNM.DTSDWRGQ....LQPES.RQRIVNKIMdtlkrhlPVSG.....QEGLHELWKIAQRFEEKIYTAATSQSDYLrkISL.KMLTMETKSQGTI
  388-  496 (135.63/80.46)	QLPPP....HTHSMSQTQPQVTQRQQlHQMnDVNDMKMRqvigVKPGVfEQHIGNALA.......PSSGkstvtEELMDRLVKAVSSLTPAALSAAVSDTSSV..ISMiDRIAASAPGNGSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.05|      18|      21|     521|     538|       4
---------------------------------------------------------------------------
  521-  538 (33.88/19.87)	G.VNGSRKMKRCINATPFD
  544-  562 (25.18/13.29)	GcVNDSIKQLNAIEASDLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28476 with Med15 domain of Kingdom Viridiplantae
Unable to open file!