<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28475

Description "Transcription cofactor, putative"
SequenceMMKSVRGVVWFNFAVNHCSRHHRSIHLPRLPPPPPPVNLYSMVTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELWKIAQRFEEKIYTAATSQMLTMETKSQGTIANNIPPNQVGPSNQPPYPDSLDSVAQTGQPNGGDWQEEIYQNIKAMKESYLPKLSEMIQKIATKLQQHDSLPQQPKSDELEMLKEFKMVLERLITFLQVSKSNISPCLKEKLGSCEKQIINCINTYRPNKMSSLDSTAKTGKPSGGDWQEEVYQKIKVMKESYLPELNEMYQKIATKLQQHDSLPHQPKSDQLEKLKVFKLMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPREMSSLQPGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVNDMKMRQVIGVKPGVFEQHIGNALAPSSGKSTVTEELMDRLVKAVSSLTPAALSAAVSDTSSVISMIDRIAASAPGNGSIVSVGEDLVAMTNCHLQDRNFLPQDGVNGSRKMKRCINATPFDVVSSAGCVNDSIKQLNAIEASDLEPIATSIIKRPKIEF
Length566
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.05
Grand average of hydropathy-0.564
Instability index51.17
Isoelectric point8.98
Molecular weight63531.12
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28475
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.73|      22|      22|     179|     200|       1
---------------------------------------------------------------------------
  179-  200 (40.17/25.79)	PKLS..EMIQKIATKLQQHDSLPQ
  202-  225 (33.78/20.60)	PKSDelEMLKEFKMVLERLITFLQ
  292-  313 (40.05/25.70)	PELN..EMYQKIATKLQQHDSLPH
  315-  338 (31.72/18.92)	PKSDqlEKLKVFKLMLERLITFLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.19|      65|     112|     149|     260|       2
---------------------------------------------------------------------------
  143-  255 (109.08/67.70)	PYPDSlDSVAQTGQPNGGDWQEEIYQNIKAMKESYLpklsemiqkiatklqqhdslpqqpksdelemlkefkmvlerlitflqVSKSNISPCLKEKLGSCEKQIINCINTYRP
  256-  368 (104.11/64.34)	NKMSSlDSTAKTGKPSGGDWQEEVYQKIKVMKESYLpelnemyqkiatklqqhdslphqpksdqleklkvfklmlerlitflqVSKSNISPSLKEKLGSYEKQIINFINTNRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     309.57|     100|     348|      20|     134|       3
---------------------------------------------------------------------------
   20-  134 (166.25/112.61)	RHHRSIHLPRLPPPpppvNLYSMVTNNWRPNQGAE.PNM.DTSDWRGQ....LQPES.RQRIVNKIMdtlkrhlPVSGQEGLHE.....LWKIAQRFEEKIYTAA...TSQMLTMETKsqgtIANNIPPN
  369-  483 (143.32/73.28)	REMSSLQPGQLPPP....HTHSMSQTQPQVTQRQQlHQMnDVNDMKMRqvigVKPGVfEQHIGNALA.......PSSGKSTVTEelmdrLVKAVSSLTPAALSAAvsdTSSVISMIDR....IAASAPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.05|      18|      21|     511|     528|       4
---------------------------------------------------------------------------
  511-  528 (33.88/25.91)	G.VNGSRKMKRCINATPFD
  534-  552 (25.18/17.31)	GcVNDSIKQLNAIEASDLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28475 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AATSQMLTMETKSQGTIANNIPPNQVGPSNQPPYPDSLDSVAQTGQPNGGDWQEE
2) HRSIHLPRLPPPPPPVNLYSMVTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTL
3) REMSSLQPGQLPPPHTHSMSQTQPQVTQRQQLHQMNDVNDM
111
22
369
165
82
409










Molecular Recognition Features






MoRF SequenceStartStop




NANANA