<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28463

Description Uncharacterized protein
SequenceMNVVRGLVAAAAAAALGTRSSGSSTKSTASSETVHESAQCAANRSAASLPSFTESQRDSRSEIQQEKSVVLSPRASVDDEVLSKSDVDLRNNLVERMTRQELSDSLAHATLLPANLAQLISSLSLASRISLRASALLLEALLEGARCTTSTGLGVTRRALIAAVSSARALHFMQEGLSWDGGDNVPSEGFLNVLDKWTNLGIYFVHHSFTLAELFAMSGFYLTATGLKTGFSAAEESVRMIDGIFGSTETSRALASIITLVRREMTQDPRFSPAKAGVLASVAALTKALTAFACLQTATRQRTVESMKMKMLYDCTVVLESASSNILTGSATSVNGAQASSTQADTISKSISSQWPPITPHKRIPSVRGTSPRLEPLSTFKSHHGTTRSHRASTMASADDQILLTDIRSVYEQNRRWEDESAPSEIVSPSTSYSSRRSLERSSTLRRLPQLGSTLSIVDIDAEDDEEIMHGLEELIGSDDDGEGEVLLEVKRALAEVARGKSIPDGLELVSRRHGDDGEEVKLVRSTRFDALFEIETTTMTQTTTTIRSHVPLGSTDGAPSSRSRLPRTGCLPDLNHLSSRNIDMRGTLQARRTSDDAVHTEQDTEDYIREEWTEMQSIVDSPNVSVLRSKASHRLGGSLQPSPSIAMLCRQEAVDDPEESGKKLQIVLKSITNKLHQRKRTFRNSNLTSPESSRPASPVKGSRIKSDKIRELTTNEADDNSPPRQKALAGRIASTSQKAFNAAKTSLNVSPTRKRSSSRRRQKPDTAPRTEGTAPAVATIHSSALEVPAFGKKPFPSEKARGDGGLAAGLRLPASRKADTRQALSEPSTPRLTARSTGSSQSIHTTHSHVETRTSHATDQQPKPTNFPHAHLVANLRRFGRYSSAAYGQHFMRIFGIGSTSFNFPSTASHHANHYAFSNHVEVALDDILLSSFTTGTSFDTSENAPLVHYVTVDHQAKAIVLTCRGTLGLSDILTDLTADYIDVTMPEGEEGAHYFAHKGMYQSASRLANQGSIIHEVLRKGLAEHPTYGLVLCGHSLGGGVAALLSLLWGTPTSRFTAQAAESHLKTGKKIIHPTLGTPFVTAITSGLPAGRPMHCYTYGCPCVASPDLAAYAKGLISSVVHNLDIVPTLSLGLLRDLKNVAASLYEEGKVAEEVVGRVVGLYQRRYKAKREARKNGQTYPTADEFAGSGSGFSPHELDDEARQVDMTPRELQLGRGSNKALEAGYRDPALVGRDLSDDAELNDWLWSLMKTMRAGNDSDKLLPPGDVFCIECHTVFVSNSMEGSDGRSAQKSFQEGTRVLLRECLDPVQRFSEPVFGRSMFLDHSPHNYEHALNALAAASPLVSDYLPTLRLIVARHPDSAESVAKDLRCNDKMTSTLPIREQLLSSLQEAHSLSQLLFAAPAAKQKPARSTDDILTRLAILDQELAEQVWLAQEHADLSNQLEEAVRRRDAIDEQARADLRSARTTLSSLRRSIRSAQASRTTVSQAKTSEHLTTEEILTLARRLAPYTSSAPRSSTTDQSAQAVLSAREAPRGSILPWPTEQMLRQSQLAAAQTQASAEAPDQADMQQGQMIDLKIEREALPPRTALPARQEPTQADEDFTFDLDLNPDMDD
Length1617
PositionMiddle
OrganismMixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Mixiomycetes> Mixiales> Mixiaceae> Mixia.
Aromaticity0.05
Grand average of hydropathy-0.410
Instability index54.96
Isoelectric point6.55
Molecular weight175693.86
Publications
PubMed=21478649

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
lipid metabolic process	GO:0006629	IEA:InterPro
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28463
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.70|      19|      29|    1053|    1081|       2
---------------------------------------------------------------------------
 1053- 1081 (24.11/36.96)	TPTSRftaqaaESHLKT.GkkiiHPTLGTP
 1090- 1109 (36.59/22.96)	LPAGR......PMHCYTyG....CPCVASP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.14|      27|      29|      10|      36|       3
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   10-   36 (42.88/25.23)	AAAAAALGTRSSGSSTKS..TASSETVHE
   38-   66 (41.25/23.94)	AQCAANRSAASLPSFTESqrDSRSEIQQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     157.54|      29|      30|    1508|    1536|       4
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  762-  789 (36.97/20.36)	R..QKP..DTAPRTEGTAPAVATIhSSALEVP
  794-  819 (34.46/18.35)	K....PFPSEKARGDGGLAAGLRL.PASRKA.
 1508- 1536 (45.03/26.80)	R..LAPYTSSAPRSSTTDQSAQAV.LSAREAP
 1537- 1566 (41.09/23.65)	RgsILPWPTEQMLRQSQLAAAQTQ.ASA.EAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.56|      21|      30|    1262|    1291|       5
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 1262- 1291 (34.67/56.06)	DKLLPPGD.VFCIEC........HTVFvsnsmegsdGRS
 1293- 1322 (27.89/20.98)	QKSFQEGTrVLLRECldpvqrfsEPVF.........GRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.65|      20|      30|    1421|    1450|       6
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 1421- 1443 (27.05/39.12)	RLAILDQELAEqvwLAQEHADLS
 1453- 1472 (32.61/15.40)	RDAIDEQARAD...LRSARTTLS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.91|      27|      30|    1154|    1183|       7
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 1154- 1183 (36.36/34.12)	AEEVVGRVVGLyqRRYKAKREARKNGQTyP
 1185- 1211 (48.55/30.92)	ADEFAGSGSGF..SPHELDDEARQVDMT.P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.80|      11|      30|     651|     661|       8
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  651-  661 (19.00/ 9.59)	RQEAVDDPEES
  684-  694 (18.80/ 9.41)	RNSNLTSPESS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.29|      22|      30|     123|     144|       9
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  123-  144 (33.09/20.53)	LSLASR..ISLRASALLLEALLEG
  153-  176 (32.19/19.74)	LGVTRRalIAAVSSARALHFMQEG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.08|      63|      83|     384|     454|      10
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  384-  454 (95.00/77.10)	HGTTRshrasTMASADD...QILLTDIRSVYEQNRrweDESAPS..EIVSPSTSYSSRR.SLERSSTLRRLPQLGST
  470-  538 (90.08/54.24)	HGLEE.....LIGSDDDgegEVLLEVKRALAEVAR...GKSIPDglELVSRRHGDDGEEvKLVRSTRFDALFEIETT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.47|      25|      32|     915|     939|      12
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  880-  902 (27.53/13.33)	...FGRYSSAAYGQHFMRIFGIGsTS
  915-  939 (41.59/23.72)	HYAFSNHVEVALDDILLSSFTTG.TS
  950-  972 (37.35/20.59)	HYVTVDHQAKAI..VLTCRGTLG.LS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.71|      23|      31|    1327|    1351|      15
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 1327- 1351 (31.82/27.92)	HsPHNYEHALNALAAASPLVSDyLP
 1360- 1382 (40.89/24.76)	H.PDSAESVAKDLRCNDKMTST.LP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.77|      17|      32|     243|     260|      17
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  243-  259 (28.03/21.42)	GIFGS....TETSRALASIIT
  277-  297 (22.74/ 9.78)	GVLASvaalTKALTAFACLQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.08|      10|      39|     867|     876|      18
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  867-  876 (20.63/14.10)	NFPH.AHLVAN
  904-  914 (16.45/ 9.47)	NFPStASHHAN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28463 with Med4 domain of Kingdom Fungi
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