<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28455

Description Uncharacterized protein
SequenceMAHDALDQPLIPYQLSPPEWRRAWSTTTDGRLGFPGFGPHCDAAQREPDESEVKDGLANVKVVHSETFSAHQMIYDKLSKPDQLVHMSSLVQAVLREQTRARSIVEPSSFRLPARATLNDQKRDAWLCDLASPDVPLAKLSKTVPHSFKGEKLLSMLVQRRVPISRALWYIKIVGASDIASQRQKPGFSVATYTREFTVQITEMLRRQLAEITMPSSALQPRPGMSLVTKTKSMLSEEEQRLRWTMRVAHSLELVQRLQTENLLDLSVLLAWITEQIETMPAPRVVYVLELAICLVHSYARSTHLSIALIIACAKRMLSSDETLPLSRQGISYWSALLHRLFVADPEVFLLPSLWLSHSPQLEAAILTGCSTIQQQTALAQALKCIAQRSLWITCASPSQSIEANINGNALRPLDLLDGINLQTSDFAKLARLFFGCQQSLVASLELSLAWATSRTRSGNYRQFAVAKLMAAHLHSNGYLARDLQSTLAAWLDKMDASSPCQPDLVLTVFDCLISQNVFDLAIYGQRMIAMGRTRRRHSSDSPRIDIIASLQILHDNNLSSAALREQLALLGQVDASDMPAVAEWLQACRLQLSDSSASRSRATSMNVLRRHVIPRLLPHLIAGSSIHATAELLLLCTATRDFLSLQGCLQALSKHCRTEECALLLSDVVLGNLTVLKIVAVALDDVVKDMLTICFQLHHSGHCSARLTCALRRPGFATCISAHDRETLSSLVPTHIRPSPIATVSERFIVSADVLHDLQALLRSQINISQLGSSLWHKYRDCEGSASIIVKAVIHWLSEAPSDGVFAEDIETVLLLLVDLDQRVGEICQREAKLALADCSSERTAPQLLALAPRLVAKGLLLLEDALRYIISPCCLAVSGSSHIGSMTTVFTSSLTLLLAPHSLPAIEQVRADSAVCSCQLDVQLVANVLADLDLVEARATGCEQNLCRLVLASPPFLINFLAKPVEILASWNQRREVHGLDTLEPRFMRELASAAVQESDSDLPPCQSWLRIAHRCKIELFADALSISQDEHAMSKDMLSNFSSEEIAARLMSECLTSREPLMTHHLTNLVKRELEMLGLESDCQTSAQLLAARRLVCLALSLSASERFTPPAAVESDNVILIRCMTLQLRLGESCQATSTARLAHQIAMREQSCLVYFLDCLSACFEAVAGIPKETQELLRIARTARESATRHALHGPNCERVLSRLYKMAFSAEIDSQLGLLSHIREDDTSCERIDLPTWDLIESVEASASADSLTKGLANTRALDLADFDVSILDQCVDPRTENEGRGLGKRSTFDSETPLLTDALWARDFRRSLRPAPILAARVQSGSAAVPAAAKRKR
Length1345
PositionKinase
OrganismMixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Mixiomycetes> Mixiales> Mixiaceae> Mixia.
Aromaticity0.05
Grand average of hydropathy0.039
Instability index55.37
Isoelectric point6.41
Molecular weight148394.47
Publications
PubMed=21478649

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28455
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.46|      14|      38|     353|     366|       1
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  353-  366 (26.89/16.14)	SLWL...SHSPQLEAAI
  390-  406 (21.57/11.35)	SLWItcaSPSQSIEANI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     594.93|     202|     505|     436|     650|       2
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  436-  604 (243.82/150.88)	........................................................GCQQS........LVASL..ELSLAWATSRTRSGNYRQFAV..AKLMAA..............HLHSNGYLARDLQSTLAAWLDKMDASSPcQPDLVLtVFDCLisQNVFD.................................................................................................................................................................................................................................................................LAIYG.....QRMIAMGRTRR....RHSSDSPRIDIIaSLQILHDNNLSSAALREQLALLGQV...DAS....DMPAVAEWLQ...ACRLQLSDSSASRSRAT
  610-  712 (57.63/36.63)	RRHVIPR.LLPHLiagSSIHATAELLLLCTATRDFL.........SLQGCLqalskHCRTE........ECALLlsDVVL.........GN...LTV..LKIVAValddvvkdmlticfQLHHSGHCSARLTCAL........................................................................................................................................................................................................................................................................................................................................................................................................
  970- 1031 (39.04/12.20)	.......................................................................................................................................................................rrpgfatcisahdretlsslvpthirpspiatvserfivsadvlhdlqallrsqinisqlgsslwhkyrdcegsasiivkavihwlseapsdgvfaedietvllllvdldqrvgeicqreaklaladcssertapqllalaprlvakglllledalryiispcclavsgsshigsmttvftssltlllaphslpaieqvradsavcscqldvqlvanvladldlvearatgceqnlcrlvlasppflinflakpveiLASWN.....QR.......RE....VHGLD........TLEPRFMRELASAAVQES...........DS....DLPPCQSWLRiahRCKIELFADALSISQ..
 1032- 1257 (254.44/139.13)	DEHAMSKdMLSNF...SSEEIAARLMSECLTSREPLmthhltnlvKRELEMlglesDCQTSaqllaarrLVC.L..ALSLSASERFTPPAAVESDNVilIRCMTL..............QLRLGESC....QATSTARLAHQIAMRE.QSCLVY.FLDCL..SACFE..................................................................................................................................................................................................................................................................AVAGipketQELLRIARTAResatRHALHGPNCERV..LSRLYKMAF.SAEIDSQLGLLSHIredDTSceriDLPT...W.........DLIESVEASASAD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.10|      80|     679|      35|     159|       4
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   35-  159 (105.19/146.96)	PGFGPHCDAAQREPDESEVKDglanvkvvH.........SETF..SAhQMIYDKlskpdqlvhmsslvQAVLREQtrarsiVEPSSFrlpaRATLNDQKRD.............AWLCDLASPDVplaklsktvphsFKG..EKLLSMLVQ
  715-  820 (117.91/72.05)	PGFATCISAHDRETLSSLVPT........HirpspiatvSERFivSA.DVLHDL..............QALLRSQ......INISQL....GSSLWHKYRDcegsasiivkaviHWLSEAPSDGV............FAEdiETVLLLLVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28455 with Med12 domain of Kingdom Fungi
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