<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28400

Description Uncharacterized protein
SequenceMFPGRGDNIKREKAAAVVGGPHAHSNGCAVCGSDQNGDSILLCDGCDGEYHTYCLVPPLTEIPAGDFYCKKCTDANLAKQRKAAALGGANAAASAAAAAPASAPTSAAAGTPAATAAAIAAATAPKPTILMKESKYRGVSKVSMKGVKKPFVAKLWQGSKYLQLGTFGSEIEAAHAYDKAALMHYGKSAQLNFPHLHDSFIRPEVAFSVRPPNPSVAPAAPAATPSLAHHADLYPSPGRGRGRGRGRGRGRGRGKRSQESPDAHAAAAHLEAKRRKMEEAAGAQEKASGVPAKKYLGVQVHRVYAHAQIHVNGKVVNLGTFPTAKDAAMAYDKAALKFFGGPVGSSDARPDEIVLNFPEKRDEFLKQLLEEEKQKMARQASGSSYASRSAQNAKYNLSIMKLNAWMSKLQRSVKMVEASQRVQWGLHPDAVQSEEDQEEKQEEDATDEVSALVKTEIFGSGPTIKKEFTTRDQKLRQSKTEIQNAVALMIEELKIYAADSPVDPLFLAPPRCAPILDLLSTSRHLKLISAINDLAHLKVKVDGKDSAAAVDGQFESKLQAVVDYRARLQMSSNNEKQKLANFMRDLESVVLPAPSSTGAPAAVVGTAPVSTDVVPQATKKTDLLKTAKYVKRKVFISKPAKPASVADDVEPKEPLDQASQKEGISKEAAANNASEADVKTEVVSAAEQQQTESSTDATPAKENETTADAEVKGANAGEVDGGEKSQTDAAGTAVSQDTANDDAAEEAKEVASTDTPDEGKPEEKESKEDKEEATAAEANGEKADEDKSETKTTTETDSDEQKSADIAEEKGNAETPEVDETGVENTEDGKSEDAASSERKASSGEHEPVAAKKDDDVVMEDAAETSASNALVIPQQDEFEWQFCLAVQVPPVKDSPTATEDVWRLLPLSSNNQLGEFVEDVFLTEKEVSDMEVAEEEVCSSSAAPDGKTAWMEHLRQLHVEESQVRQQIQRETNHQHALQGIMKIEQDRLNGVSVVYREAMQKLDAKTSLALKNHARVSQDAQLVKLMQHSFNPILGDLLDKCEDALLNCFRKLSLRFEDFAQEFEYYRNALLSLMRSPGKDVPAVKGDASPVDAADLVMDDDSVTIKRENIAKVTSEIADTDPAASPEVVELVDDSEAIATEEGDEFDQLGDSSGLREAYITFYMGEMEALWKERSSSLEMVQAIQRSLLNNALEVASPAKAVVPQRPSKTKTSDDVEMKVEDEAAEEKTDESETEAQPEDKATEATSVEKSQEAANTPAETEKEADVKSDASTEVVVKTEPQEESGNFRREQELREAVESCLAQWQRIQWPEELNSTFLAPTTPTSSNEPAAIKSELIKTQSTIGADGDDSEYESPYSVMDELKRVMIDLTQDQVVPVPPPVEPTTLVVYHPVFINHQTPKNHPECPERMDRVVSILNTLVKKHQDTLKLDRLSMSPEELCPPETTLLMVHSPTYLRQMKQRSIEAGSQTASSPTASSPSSRALVFESDSGIREDAPKRRGRKKAALVGAFGAASLEQNGITLDTFVSSKSWDVARAAAGTVCLAVDRVVRKEYHNAVCLVRPPGHHVGRHGRTETAPSSGFCLLNNVVIGATHARLYPWIRKVAVLDWDIHHGNGTEELLKDDPDAFFASIHLYSSGKYFPGTGKSCETGNLINVALENTGAGSGSLAFRSALESKVLPAMRAFQPDIIFISAGFDGHRDDILGGVAAVNNPNVPAGYVEEDYAWATLEVLKLAAEVCDGRVVSVLEGGYDVRRETNSLAKSVAAHVAAISAFEAARRNMDSSATGDVEMKEEEAPDAAATDDSSAAAIKTEHPVKTEPVGLLEKLLATDLTDGNVIIIDDEENEEEGGEAAHDGVHDGDDVEDEDTGEDDEEDGDGNGDGDVAMEDAEPEEKSGQAMEVADTRWRIPEMSDPFYLADILLGRVGVLRSTAESIILELCEAQAKLEPGQAADDALRLAIKNKLERVQTNLKLLRKLVPEFDGKTKPIESVNQTHRNLMLEYHWKNQVQDMGAKAQAVYLEQLGGAFPRLEMLGDVRCPPTPSSLFVPKSHKRSRVFDPYGEKQPATLNEMMDYMMAKNRKLKFFKHAETTRGGRRVIKSIKCEINKEVTVHLSFCPPIPESGPSGESGVAASPMTPSTPTSPAFASGRLRSTRNKHKKQQQQLVKKKKGDMLTKAKLAAEEATKMEMEELKTRIAEAREAIKEQEQARAAGLQVTKYIQRLSIFPYNEDAPLGAWSESSHNLFRLVTLHGRKALDHFRKQHPETCFYHLFTWLGYYDKIYQTPCSFCKKLLAKESEEWAYVPPSFRDYANGQAFHSKCLPIE
Length2325
PositionTail
OrganismPhytophthora sojae (strain P6497) (Soybean stem and root rot agent) (Phytophthora megasperma f. sp. glycines)
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Peronosporales> Peronosporaceae> Phytophthora.
Aromaticity0.05
Grand average of hydropathy-0.550
Instability index48.93
Isoelectric point5.09
Molecular weight253171.18
Publications
PubMed=16946064

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28400
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     100.94|      22|      22|    1843|    1864|       1
---------------------------------------------------------------------------
  805-  826 (28.78/12.83)	DI......AEE.KGNAETPEVDETGVENT
  827-  854 (20.21/ 6.48)	EDgksedaASS.ERKASSGEHEPVAAKKD
 1843- 1862 (25.95/10.73)	........DDE.ENEEEGGEAAHDGVHDG
 1863- 1882 (26.01/10.78)	DD.........vEDEDTGEDDEEDGDGNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.53|      22|      22|      84|     105|       2
---------------------------------------------------------------------------
   84-  105 (37.87/18.67)	AALGGANAAASAAAAAPASAPT
  107-  128 (38.66/19.22)	AAAGTPAATAAAIAAATAPKPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.10|      16|      22|     746|     765|       3
---------------------------------------------------------------------------
  748-  764 (25.23/12.96)	KEvASTDTPDEGKPEEK
  776-  791 (23.87/ 8.61)	AE.ANGEKADEDKSETK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.39|      19|      22|     253|     274|       4
---------------------------------------------------------------------------
  256-  274 (31.11/20.10)	RSQESPDAHAAAAHLEAKR
  276-  294 (30.28/11.16)	KMEEAAGAQEKASGVPAKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.10|      20|      26|     636|     661|       5
---------------------------------------------------------------------------
  636-  656 (29.53/12.92)	ISKPAKPASVAD.DVEpKEPLD
  664-  684 (23.57/10.32)	ISKEAAANNASEaDVK.TEVVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.17|      22|      25|    1737|    1761|       6
---------------------------------------------------------------------------
 1737- 1761 (31.10/27.89)	AAEVCDG.RVVSVLEGgydVRRETNS
 1763- 1785 (31.08/17.81)	AKSVAAHvAAISAFEA...ARRNMDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.25|      23|      25|    1317|    1339|       9
---------------------------------------------------------------------------
 1317- 1339 (36.61/22.47)	NSTFLAPTTPTSSNEPAAIKSEL
 1343- 1365 (36.22/22.12)	QSTIGADGDDSEYESPYSVMDEL
 1373- 1389 (21.42/ 9.31)	TQDQVVPVPPPV..EPTTL....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.88|      15|      15|    1214|    1228|      10
---------------------------------------------------------------------------
 1214- 1228 (24.76/14.29)	TSD.DVEMKVEDEAAE
 1231- 1246 (21.12/10.88)	TDEsETEAQPEDKATE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28400 with Med27 domain of Kingdom Oomycetes


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKPASVADDVEPKEPLDQASQKEGISKEAAANNASEADVKTEVVSAAEQQQTESSTDATPAKENETTADAEVKGANAGEVDGGEKSQTDAAGTAVSQDTANDDAAEEAKEVASTDTPDEGKPEEKESKEDKEEATAAEANGEKADEDKSETKTTTETDSDEQKSADIAEEKGNAETPEVDETGVENTEDGKSEDAASSERKASSGEHEPVAAKKDDDVVMEDAAETSASNALVI
2) EELNSTFLAPTTPTSSNEPAAIKSELIKTQSTIGADGDDSEYESPYS
3) EVASPAKAVVPQRPSKTKTSDDVEMKVEDEAAEEKTDESETEAQPEDKATEATSVEKSQEAANTPAETEKEADVKSDASTEVVVKTEPQEESGNFRREQELRE
4) GNVIIIDDEENEEEGGEAAHDGVHDGDDVEDEDTGEDDEEDGDGNGDGDVAMEDAEPEEKSGQAMEVADTR
5) MDSSATGDVEMKEEEAPDAAATDDSSAAAIKTEHPV
6) MKQRSIEAGSQTASSPTASSPSSRALVFESDSGIREDAPKR
7) PPNPSVAPAAPAATPSLAHHADLYPSPGRGRGRGRGRGRGRGRGKRSQESPDAHAAAAHLEAKRRKMEEAAGAQEKASGVPA
8) SFCPPIPESGPSGESGVAASPMTPSTPTSPAFASGRLRSTRNKHKKQQQQLVKKKKGD
640
1314
1196
1837
1783
1461
211
2116
873
1360
1298
1907
1818
1501
292
2173










Molecular Recognition Features






MoRF SequenceStartStop




1) AAIAA
2) LLKTAKYVKRKVF
117
623
121
635