<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28395

Description Uncharacterized protein
SequenceMELLECTNDEPWNRTIFEHLISVMITFMLNSTVRFNEIVVKLNSKLEGRTWTKSSHYVMWFVLNATSGFIGKNMLTDFVPCLRLFDILFPEAEDPDRAIDLPIPCCSRKDSTGQSNDSEISLTQKDGVLPKNILGKELSSTTENTKLSVSQFPISKKMDIDSSDLNRELVTYRDNENEVQEQSSTSAEDSDNECIQNETESLLPPHFRSSTACWKRQGRLLHLATAPVCLWQHVLRKSRLGQDHLPRVMPPALRPIESRISRRMQALVQSVSSTQISNSSVHLVSKLTWNQLFVVLNAFSTDNEVSQLIQRLIDIFWTNETAKDNQKLEHGVLWSRLIKNGKVDFPYDLSAYGRLQPLSHHLMRTMSVHVRMLVLHFFLQKFSVLPNSNMLSTPAIIETFCRILACREVESNNVNRILCLLTKLQPLWSYNTSNTEPKYAVLCGTTEPKVSNYFSCSLVFTLLDTLGFRLADILTPEVRIHTLTSLIGLVKLWSNWSTSVLDNKEPKNLCDGGTSEIPIELQYLLDWNIIKFARSIQAPDCVIYGFCSALTSSTLTQTQPGTNSLHSVNNSACVSQPQSSNIMSQQGSGLVNNTTSGSVSMIRPFIPVNTGVLTSISSSSIIQPPNDPILSSNTGVNSLTGGSGSTGFPNSIPGYPFLMCDNVEVNRFVLYSLLQMYHTFDLEEASGIRPNLVEQIRSMCEQCGPNSLIDLPQLITKRLPDFLILVIRQLTNPNTGELNIGSLPSSDPMNVESMESTLPYTDKSISLSKLCSMVQEEYTSFSNRNFEWSDAVSRSNMFLCLLHHISVRFLNRQLRMLCDYIVSSLTFTAQVNFTTDKCLSTLSDFCIRWHVIPLDRFLLFLANPNNSDSNTQRKSPHSDPLSSRDWFSCIRALHEIIPDQWITYPKTCTISCNTSNDSLEETDKPPHLPVSYGHLLLRLLPLLEVVIMQFLMCEVPFVLLIPFCRAIAPLFRYHRRPVNVCYTVLHDHAEFTMKGLLCKSNIGYPAYHLQLSDTKYLDTSPSSESDMDKTPWIVDRLLCQLLVHCIISKHQRLAMKAALNRSSKGFDQQHSSVNGIFTQQGWNNLLLCVKQSEVFYDVICRNLSNVSSDCNIVHDNTDQSVMNILLNPESFETQFRSMFMTWYSCNIFKYNWEYLFGLIDPICKTNQRHGIYGHSAAWRIWNYEESVCIQTAGLYAASIELMSSFMSPSELTSVVSDLLTNCAKHMYFNQLLNITGALAVILPSVYRFPLFKFCVTLFNDPILCDTTPESNPVDPESMFTCISDVKSTNDHNTNTKWRRSSRALRHRKLLDVNLTSVDNVTLASEATSFKDENSALLKPPKVALYFFEKYLPLDQKTDSDLVDILSNGGCSVIEMSHQNTEASKTLKENFNNLEFSSDVMEYLVKANLWHSIWAHANTSHLASLPGIFSDLILPELRTEAQLLMAFYLVAPLMGSLHSERPAKLVDLTAELYRAVWKVDTVLAKSNYEKSHHSEISIDISNSKQLGEHLPSETGVPLVHVDTIADLLYHIKYMYVGNGVLDQVRPLLPQLRPSLRKRLKFILPQDSSVSQQQQNQNGSHPIFENRVYRASIKPPMCNGDF
Length1600
PositionTail
OrganismSchistosoma mansoni (Blood fluke)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.148
Instability index45.89
Isoelectric point6.17
Molecular weight181091.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28395
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.26|      44|      44|     810|     853|       1
---------------------------------------------------------------------------
  770-  807 (50.73/28.36)	.......LCSMVQEEYTSFSNRNFEWSDAVSRSNMFlCLL.HH.ISV
  810-  853 (78.54/48.48)	LNRQLRMLCDYIVSSLTFTAQVNFTTDKCLSTLSDF.CIR.WH.VIP
  854-  898 (61.00/35.79)	LDRFLLFLAN.PNNSDSNTQRKSPHSDP.LSSRDWFsCIRaLHeIIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.27|      27|     712|     539|     581|       2
---------------------------------------------------------------------------
  555-  581 (47.69/48.08)	LTQTQPGTNSLHSVNNSACVSQPQSSN
 1263- 1289 (49.58/19.36)	LCDTTPESNPVDPESMFTCISDVKSTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.62|      10|      15|     206|     215|       3
---------------------------------------------------------------------------
  206-  215 (20.06/10.22)	HFRSSTAC.WK
  222-  232 (15.56/ 6.29)	HLATAPVClWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.03|      10|     383|      82|      91|       4
---------------------------------------------------------------------------
   82-   91 (19.74/11.90)	LRLFDILFPE
  468-  477 (19.29/11.44)	FRLADILTPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.55|      15|      15|     303|     317|       7
---------------------------------------------------------------------------
  303-  317 (26.70/16.53)	NEVSQLIQRL.IDIFW
  319-  334 (22.85/13.09)	NETAKDNQKLeHGVLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.43|      24|      44|     582|     607|       8
---------------------------------------------------------------------------
  582-  607 (37.10/32.92)	IMSqQGSGlVNNTTSGSVSMIRP.FIP
  629-  653 (40.33/25.48)	ILS.SNTG.VNSLTGGSGSTGFPnSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.71|       9|      44|     371|     389|      11
---------------------------------------------------------------------------
  360-  368 (17.14/ 9.19)	HHLMRTMSV
  376-  384 (16.57/ 8.56)	HFFLQKFSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.37|      22|      36|     406|     427|      13
---------------------------------------------------------------------------
  406-  427 (38.24/21.89)	CREVESNNVNRILC..LLTKLQPL
  443-  466 (35.13/19.51)	CGTTEPKVSNYFSCslVFTLLDTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28395 with Med23 domain of Kingdom Metazoa
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