<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28379

Description Uncharacterized protein
SequenceMHDIAKCSDNLKFLDLLATVRADQIHLGSNNTRTGPYLIRYSTFLNHLQRIAIHCGLQLSSGPCSGGGTSAGALVWRLTSECFAVVVAATNNSITTSDPTYNNSPELTDLISIAAVYFEFNHDKAVPCPELATDLSMGKYSSLLQHVDNLLTIYAVPGDKIDRARTYLCLQALEKDLSMLTQAMRTDLENNIDAISTFRRAPNQKHDVFSMRNLVNRSLVGHFVGRTGGRLARLTYLVTSAQAMISNATGVMKNNLQMNSKSTYSTSIGCGSRDGLIGGYMARIGLCPRLSYVEDTSVVVQSAVQRLPFMPLVTLQKDAYGISVPHFAQPDEIKCISIEAEFVLHLDPPLPISTDAIQQLERTTGLSNTEIIDQKEEDIVLLILRKHKQEHLYGINTHLQNPNITQHSYQIKSDVKAYLVSSVPFTCSDQIGEIISILRKQASALAFYETFIVHPDKPVEKDDSLTFSFDIKIMGSQMISLEFDDPNRVGAKIHASLHVRPFDVQCLELNYFPNAHDRLNSNCPSNDKEVDVMPLTKLDIESGGNLKANFSKILTKTHTLPIGFVWLLTQLQCPVHKQLVSMKLPVTNSYNSTENKESCSSVNQKQLTSLRTMLNRVKSSIIIRGANGTGGVLCGGDRKVSLDFESSSSFAAAQVFALNTPSYLNSAKKIPPLPPGVMATPPPAFTHLDTSSSDFGIISSLRPVNSQGKLRDMHSSSSLPVVSTNPSRGLRLDDLLVDSTFQTQQQLQQHNQQRNAPPISFSHSLPSYVSPIPGTHTASLSDVKEAYSDMINPNISTSNHLSLPTIHSSHKYGSSVLSGSNSIPSNFYNMPSMSISASGSEATSSSAVTKSKSFTASPVSDNSRAPSTSGSMLVNLLNEDSLSTSIPLVSPSSMTDRHHYNTSHSLTNLQNSPLTSAAGIINVSNSRLPGMMLSNNSQPPSSDAPNLTPNSSQYPSVRNSSLITPNTGRTKHASLKNSQTSVTVNPTSNPKKPRKRRRGTVEGSFRCISSQKGNTPVPSVYSNYPTTKHQRVDTVLPTTSISLSGAYQRPTFNQANSNFSSSSLPYVQQSTVASTVQSISMQTPNPSKSVYDFDDNPGSMFDVPVGNISSSNSLSFSSGSSLTSPKSGVSVNLLQSGSLAVTNTNPVSNFPVTTMISSNSNLERAIERITSMYLTNYHVRSFGSSTPKARVNFSQNEVDNYNKIQSVQSNSTPINTSDSGGTVPPTQSLSSVKKRKKRSVEGKPSAYMLQMLQLANSSISGSDASITTTSVTTGASGVPNQSAITPLVLNNSGLKQIKSTNKLVGHGSVLVKKERKRRLGHGFTEKTHFSFIPNSNTYNQVQETADTSNIPKLMKINRVSRPPSSDVPKDNQTGSGTTPNLYSNCISMSPNSSSKKKVSALNSNPLGTGVGIGSGSDDMIVSKRLFSTSTSPLVSGDKRKRNPETSKQSNNSQSAYSNSGTSSDPAFIPSPLLPPTSSDPPTNSNTSRKTPCPSLHTAPNLPRVSHIPTSKSQPVQQSNTLNYISSSSVCTANPASVSVVSSSSGLIKGYKIPKKKSTTTGCLPSIPLSDASGDKSVGMLSTTLQQIQESISSYRDTPDSQSPEKSDESSLAIVENLYPSSNDPNLEGVDTINVAVYSANVNGVANNTDDNSLFPSDSVSGYTAPNTENFSQSILHPISLQSNSSVSVQCSQSSQQQQQFPRKSSVKSISDIVDKLRAKSTTSISSSTSTIISDSSNIGSSDTTAITSYEVKDSTINPMLSDNPSCVRSITKKNDEFQDQWRDNIFEKFCPSGTPTPHQSENGQNNICRSDSEVDLSTSIENNEESVWTSGNKEPVYDKDERNISSSNSGAPMIHSNTQSISDSERKQGKQQFECIKANTDTPASPTELLTTVPTSNSNVSSKIIPISPTSMKCLNSTGSVSGTNMKPNIVRHSSLRFEKKTGSGRYSRLGGGVNGMMLHGGLVQRSNSDNYSHSSGVHGHSNRLPRGGMNNPVNSVFITISFVKSSSILRVCYNLHFE
Length2019
PositionMiddle
OrganismSchistosoma mansoni (Blood fluke)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.437
Instability index47.11
Isoelectric point9.00
Molecular weight217747.76
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28379
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     478.01|      67|      70|    1432|    1498|       1
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  793-  858 (41.43/ 8.01)	PNIST.S.....NHLSLP..TIHS.....SHKYGSS...............VL.SGSNSIPSnFynmpsmsI....S.ASGS......EATSSSAVTKSKSFTASP..............
  913-  978 (57.20/14.04)	PLTSA.AgiinvSNSRLP.GMMLS.....NNSQPPS...............SD.A.....PN.L.......T....PnSSQY......PSVRNSSLITPNTGR.TK.....HASL..KNS
 1318- 1389 (55.44/13.36)	RLGHG.F.....TEKTHFSFIPNS.....NTYNQVQ...............ET.ADTSNIPK.L.......M....K.....inrvsrPPSSDVPKDNQTGSGTTPnlysnCISM....S
 1432- 1498 (116.81/36.81)	PLVSG.D.....KRKRNPETSKQS.....NNSQSAY...............SN.SGTSSDPA.F.......I....P.SPLL......PPTSSDPPTNSNTSRKTP.....CPSL..HTA
 1502- 1571 (61.12/15.54)	PRVSHiP.....TSKSQP..VQQS.....NTLNYIS...............SS.SVCTANPA.S.......VsvvsS.SSGL......IKGYKIPKKKSTTTGCLP.....SIPL..SDA
 1598- 1664 (42.08/ 8.26)	P.....D.......SQSPEKSDES.......SLAIV...............ENlYPSSNDPN.L..egvdtI....N.VAVY......SANVNGVANNTDDNSLFP.....SDSVsgYTA
 1758- 1819 (60.35/15.24)	PMLS..D.....NPSCVRSITKKN.....DEFQDQW...............RD.NIFEK....F.......C....P.SGTP......TPHQSENGQN.NICRSDS.....EVDL..STS
 1835- 1911 (43.58/ 8.83)	PVY...D.....KDERNISSSNSGapmihSNTQSISdserkqgkqqfecikAN.TDT...PA.........S....P.TELL.........TTVPTSNSNVSSKII.....PISP..TS.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.47|      27|      46|    1087|    1113|       4
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 1087- 1113 (48.72/31.58)	SKSVYDFDDNPGSMF..DVPVGNISSSNS
 1136- 1160 (42.58/26.40)	SGSLAVTNTNPVSNF....PVTTMISSNS
 1163- 1185 (24.17/10.88)	ERAI....ERITSMYltNYHVRSFGSS..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.88|      50|     797|      61|     110|       5
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   61-  110 (87.44/47.08)	SGPCSGGGTSAGALVWRLTSECFAVVVAATNNSITTSDPTYNNSPELTDL
  860-  909 (85.43/45.81)	SDNSRAPSTSGSMLVNLLNEDSLSTSIPLVSPSSMTDRHHYNTSHSLTNL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     243.76|      71|     627|     585|     678|       6
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  585-  671 (108.38/83.15)	PVTNSYNSTENKESCSSVNQKQLTSLRTMLNRVKSSIiirganGTG.GVLCGGDRKVSLD..FESSSSfaaaqvfalnTPSYLNSAKKIP
 1224- 1279 (94.00/46.88)	PPTQSLSSVKKRKK.RSVEGKPSAYMLQMLQLANSSI.............SGSDASIT....................TTSVTTGASGVP
 1391- 1431 (41.38/13.45)	......NS.SSKKKVSALNSNP.......L.............GTGvGIGSGSDDMIVSKrlFSTSTS......................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.00|      23|     628|    1058|    1080|       8
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 1058- 1080 (39.97/19.34)	NFSSSSL.PYVQQSTVA..................STVQSIS
 1669- 1710 (23.47/ 7.74)	NFSQSILhPISLQSNSSvsvqcsqssqqqqqfprkSSVKSIS
 1723- 1740 (22.56/ 7.09)	SISSSTS.TIISDS.....................SNIGS..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.97|      17|     261|     426|     443|      10
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  426-  443 (26.41/21.11)	TCSDQIGeIISILRKQAS
  690-  706 (30.55/19.40)	TSSSDFG.IISSLRPVNS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.80|      26|     617|    1289|    1314|      16
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 1289- 1314 (42.52/27.13)	LNNSGLKQIKSTN...KLVGHGSVLVKKE
 1915- 1941 (34.32/20.11)	LNSTG..SVSGTNmkpNIVRHSSLRFEKK
 1959- 1976 (24.96/12.10)	L.HGGLVQ.RSNS...DNYSHSS......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28379 with Med1 domain of Kingdom Metazoa
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