<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28376

Description Transcriptional co-activator crsp77-related
SequenceMPVPYPQHPIPIEALSEYDIREILLDGHEILEKPLTPAANFQRIINHIDFSESSSYGDNCSQNKESESFLKNFTPKIWENVKETLRTTLIEINALVDVLSIIKEGKYLAINPVADDSQETNLSLYLSGKKRSIAAAADILMKGAERLRRRHSELIDARVRRSNSLVPPQFDNTHNSFHKALMHLRQEWRLKLHQNSILGDVSLRSVGSHFRESGNFEVRESDVFFDGKSDVESQDDKCVDAVTGVMSMEALLNSSHGPGLLNVEFLESDINSLPTPLLEFIFHKQQISSCSRDPLPINQRQKLFKAQRLLACREILSMLSCEASTSKEYNHLTGSVAFATQDKIIATLFPGVQICLSSVVRPTVFGEDVLGDERPKLQDKKLPDHTVFTMDYSNCINLQLHRMLAGQHRAVWPNLASLPQPACGPVEIPLYYRSGGANGLPASRFSSLSHSTKFSSGFSVAVASVSGFASQAASALCVIHATNRINANSVEKTTTFSQRSQPIFAGQDRLSLFTEWGHSLPAGTCVPPVGFRHGVPNSADDSVPGTSDIAMLEYNLLSRGVDEDTMKTVLGTNPSLLSRTIAISRHHYLRDQVYSIISELSQCSPIKIIAHWDTFNSATETSVRLCFYCTDYDAYRSWLGVTITPNGLVVLYADPPRTYRLGMDLSRLKDVLNNQVLYTQMNYIDILAIKILGWVRLGNNPFSAVANPEEIGDGPVIVKMFASPSAKYLICLRASAVMDIRMFVSRCSPCDYQFITDHKDIFSNQDFREVFLSHMYGKSLVSKVEALMTLLS
Length792
PositionHead
OrganismSchistosoma mansoni (Blood fluke)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.159
Instability index45.04
Isoelectric point6.33
Molecular weight88266.59
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28376
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.07|      14|      15|     248|     262|       1
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  248-  262 (20.76/16.36)	MEALLNSSHGPgLLN
  266-  279 (24.31/13.73)	LESDINSLPTP.LLE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     356.45|     116|     288|       7|     133|       2
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    7-  133 (167.62/145.50)	QHPIPIEALSEYDIREILLDGHEILEKpLTPAANFQRIINHidFSESSSYGdncSQNKesesFLKNFTPKIWENVKETLRTTLIEINALVDVLSIIKEGKyLAINPV..ADDSQETNLSLY..LSGKKRSI
  292-  411 (188.83/127.18)	RDPLPINQRQKLFKAQRLLACREILSM.LSCEASTSKEYNH..LTGSVAFA...TQDK....IIATLFPGVQICLSSVVRPTVFGEDVLGDERPKLQDKK.LPDHTVftMDYSNCINLQLHrmLAGQHRAV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.24|      27|     142|     589|     615|       3
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  589-  615 (50.88/30.30)	LR.DQVYSIISELSQCSPIK...IIAHWDTF
  732-  762 (42.35/24.13)	LRaSAVMDIRMFVSRCSPCDyqfITDHKDIF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.58|      18|      23|     183|     200|       8
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  183-  200 (31.53/22.89)	HLRQEWRLKLHQNSILGD
  209-  226 (31.06/22.43)	HFRESGNFEVRESDVFFD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28376 with Med17 domain of Kingdom Metazoa
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