<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28366

Description Uncharacterized protein
SequenceMQVCSNFKRFRASLQELLGIKRRKQVRGQDISAPYNFKKETTVIPGITEEQLEGLRDKAAAAHLNPLRQHSPSSARSRRGVDRNKNKHNKNNNNKTIKSHNQLRSSSLANLPILDSTTSPPSTSANKKQLLASKSCLSLSALHSSHGQGQPQPQPPRKFSVPSSASSPTVSHGSSGGHGHGSLGFDLGLGGGEMGTGLRPPSPCLSLPTRIGMGINSAASASPVTPTSPLGSGSLVAAGGGGGGGGGGGGGGGGGGGGGGGGGGRHRNGSGSGNGSGSGGSGTTTPKSPSPVSVLVIGTEAVSLSPISLVHQQQQQQQQQQQQQQQQQQQAKLQLNTFPSSTTNSTTATETYVSAPASATSEVSAVSAASAMGGTADLLDSFVLGSPISPISPISPVSPLSLDDEDNGDGGNMNMIKKRTGSVRVGTGTGTGTMSF
Length436
PositionTail
OrganismNeurospora tetrasperma (strain FGSC 2509 / P0656)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Sordariaceae> Neurospora.
Aromaticity0.02
Grand average of hydropathy-0.547
Instability index69.72
Isoelectric point10.20
Molecular weight43933.05
Publications
PubMed=21750257

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28366
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.13|      15|      15|     239|     253|       1
---------------------------------------------------------------------------
  239-  253 (35.28/ 9.75)	GGGGGGGGGG...GGGGG
  255-  272 (27.85/ 6.40)	GGGGGGGGGGrhrNGSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.12|      34|      85|     188|     224|       2
---------------------------------------------------------------------------
  188-  224 (60.97/29.43)	GLGGGEMGTGLRPP.SPClslPTRIGMGINSAASASPV
  273-  307 (53.15/20.10)	GNGSGSGGSGTTTPkSPS...PVSVLVIGTEAVSLSPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.11|      28|      30|     121|     149|       3
---------------------------------------------------------------------------
  121-  149 (43.47/20.60)	PSTSANKKQLLASkSCLSLSALHSS...HGQG
  151-  181 (45.64/18.68)	PQPQPPRKFSVPS.SASSPTVSHGSsggHGHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.28|      21|      30|     350|     370|       5
---------------------------------------------------------------------------
  350-  370 (33.65/19.18)	ETYV.SAPASATSEVSAVSAAS
  380-  401 (32.63/18.36)	DSFVlGSPISPISPISPVSPLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.04|      14|      34|      57|      71|       7
---------------------------------------------------------------------------
   57-   71 (20.88/16.64)	DKAAAAHlNPLRQHS
   94-  107 (24.16/14.37)	NKTIKSH.NQLRSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28366 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GITEEQLEGLRDKAAAAHLNPLRQHSPSSARSRRGVDRNKNKHNKNNNNKTIKSHNQLRSSSLANLPILDSTTSPPSTSANKKQL
2) PISPVSPLSLDDEDNGDGGNMNMIKKRTGSVRVGTGTGTGTMSF
3) SCLSLSALHSSHGQGQPQPQPPRKFSVPSSASSPTVSHGSSGGHGHGSLGFDLGLGGGEMGTGLRPPSPCLSLPTRIGMGINSAASASPVTPTSPLGSGSLVAAGGGGGGGGGGGGGGGGGGGGGGGGGGRHRNGSGSGNGSGSGGSGTTTPKSPSPVSVLVI
4) SPISLVHQQQQQQQQQQQQQQQQQQQAKLQLNTFPSSTTNSTTATETYVSAPASATSEVSAVSAAS
46
393
135
305
130
436
297
370










Molecular Recognition Features






MoRF SequenceStartStop




1) GGGGGGGGGRHRNGSGS
2) NMIKKRT
256
414
272
420