<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28345

Description Mediator of RNA polymerase II transcription subunit 31
SequenceMSDDQNQETPSIEPAPRSSEKIANKIRFETELEFVQCLANPHYLASLATQGLLSQPNFIAYLKYLTYWLDVEKGFGRFIVYPHALHHLALLQQPSFREALKDPELRMRLEREQYLHWRTWRTSEPAVVPTRARTAQADETTDAATPGPTRPTRRSGTARSSGVRTPAGRTPRSVRTPGTGIVRTPAIGVRTPAARSTLSVSTTIYDHSKEVATPPRTMVGLASPGLEISPRDSSRPEDIVMLSPEKTSPVVNVAPPTTGDPLVLTEKADKEPKTEP
Length276
PositionMiddle
OrganismSerendipita indica (strain DSM 11827) (Root endophyte fungus) (Piriformospora indica)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Sebacinales> Serendipitaceae> Serendipita.
Aromaticity0.06
Grand average of hydropathy-0.572
Instability index54.40
Isoelectric point9.21
Molecular weight30540.18
Publications
PubMed=22022265

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364129
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP28345
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.57|      18|      18|     154|     171|       1
---------------------------------------------------------------------------
  151-  170 (30.62/12.50)	PtrRSGTARSSG.VRTPA.G.RT
  171-  191 (21.96/ 7.24)	P..RSVRTPGTGiVRTPAiGvRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.05|      18|      35|      43|      63|       2
---------------------------------------------------------------------------
   43-   63 (27.76/28.68)	Y...LASLAtqgLLSQPNFIAYLK
   81-  101 (29.29/20.09)	YphaLHHLA...LLQQPSFREALK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.72|      19|      35|     208|     237|       4
---------------------------------------------------------------------------
  208-  236 (24.12/27.80)	SkevatPPRTmvglaSPGLEISPRDSSRP
  243-  261 (35.60/13.18)	S.....PEKT.....SPVVNVAPPTTGDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28345 with Med31 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVVPTRARTAQADETTDAATPGPTRPTRRSGTARSSGVRTPAGRTPRSVRTPGTGIVRTPAIGVRTPAARSTLSVSTTIYDHSKEVATPPRTMVGLASPGLEISPRDSSRPEDIVMLSPEKTSPVVNVAPPTTGDPLVLTEKADKEPKTEP
126
276










Molecular Recognition Features






MoRF SequenceStartStop




1) LVLTEKADKE
262
271