<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28341
Description |
"Related to SSN8-DNA-directed RNA polymerase II holoenzyme and SRB subcomplex subunit, cyclin C homolog" |
Sequence | MATDYWASSHNKKWVVDRLALFTSRAEDLRFTTPEHLAFLHIFFANLIFKIGKRLHFRQRVIATATVFFRRFYLKNHLCDTEPYIVLVACCYLAGKAEELPAHIKNVINIANTVFGELGVWPAPLDNHRLAEMEFYLVDELECDLTVFHPYRSLLALCGKETDEAGMGGPGHTGQETAPDLGVGVISGERYWGTGAGKLLLDDRTLQLAWLIINDTYRTDVCLLYPPFLIAIAAIYLSLVNHDRISKAHGSPDDPQTQDASDQLQISASTPMVTSPSLVASTPKAPTAPLGPDPITFLANLNVSMATVAAIAQEMLSFYTLSARYVDDSGNGGANAAQRQRSTDNDVQMSDGTSESTIGEKVRARQLVEVLRRMRTEKERESEGASINSVGPLMSPTATVGVQGKTGGAGRGVQEYHAVAQWRWKIEGRDETGDEDDEDEVCGICRIAYDGCCPDCKFPGDDCPLVCGKCTHVFHMHCIEKWIATPSSNRQCPMDRRVWVNAGEADPVEPEQPAQEPSMDA |
Length | 521 |
Position | Kinase |
Organism | Serendipita indica (strain DSM 11827) (Root endophyte fungus) (Piriformospora indica) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Sebacinales> Serendipitaceae> Serendipita.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.238 |
Instability index | 42.23 |
Isoelectric point | 5.16 |
Molecular weight | 57427.37 |
Publications | PubMed=22022265
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Function
Annotated function |
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GO - Cellular Component | anaphase-promoting complex GO:0005680 IEA:InterPro
integral component of membrane GO:0016021 IEA:UniProtKB-KW
mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | cullin family protein binding GO:0097602 IEA:InterPro
cyclin-dependent protein serine/threonine kinase regulator activity GO:0016538 IEA:InterPro
DNA-directed 5'-3' RNA polymerase activity GO:0003899 IEA:UniProtKB-KW
ubiquitin protein ligase activity GO:0061630 IEA:InterPro
zinc ion binding GO:0008270 IEA:InterPro
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GO - Biological Process | anaphase-promoting complex-dependent catabolic process GO:0031145 IEA:InterPro
cell division GO:0051301 IEA:UniProtKB-KW
regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP28341
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.49| 20| 360| 90| 144| 1
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61- 80 (39.28/36.10) VIATA.TVF................FRRFYLKNHL.CD
107- 144 (19.22/34.89) VINIAnTVFgelgvwpapldnhrlaEMEFYLVDELeCD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.31| 31| 36| 238| 270| 2
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238- 270 (48.02/32.97) SLVnhDRISKAHGSPDDPQTQDASDQLQISAST
277- 307 (53.29/30.24) SLV..ASTPKAPTAPLGPDPITFLANLNVSMAT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 77.79| 18| 24| 436| 453| 4
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436- 453 (37.61/25.33) DDEDEVCGICRIAYDGCC
461- 478 (40.19/27.58) DDCPLVCGKCTHVFHMHC
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