<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28340

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMDDSEALAAEQQEVKNPFPTPPVYWNRYTPENLRLLAALKDKIAERNGSSDPASIEHLEEPIDQSELLPYEPLLPSFPLLELEPPRLDWILEEDEYSTFGEYHSTRETTQVFPAGVKRLYDPEPGADPRPHLRQLLVSLLASYHKLLSDVLEPVPSGYHGHPPPEIIPLLESGEATWPPPLNWEATIHWMRDIVLNLGWAVNEYRPVQARMALESMMQRQIDVRREETKAIHSKCDELEKVLTELRQNSLANRSPSPVDKSMVVELNQSTTAPDLNNSSLTLDVAIPTTYDLIQWSKEVPI
Length301
PositionMiddle
OrganismSerendipita indica (strain DSM 11827) (Root endophyte fungus) (Piriformospora indica)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Sebacinales> Serendipitaceae> Serendipita.
Aromaticity0.07
Grand average of hydropathy-0.516
Instability index56.24
Isoelectric point4.67
Molecular weight34277.28
Publications
PubMed=22022265

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28340
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.61|      15|      15|     150|     164|       1
---------------------------------------------------------------------------
  150-  164 (31.22/15.57)	VLEPVPSGYHGHPPP
  166-  180 (29.39/14.27)	IIPLLESGEATWPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.85|      14|      15|     261|     275|       2
---------------------------------------------------------------------------
  261-  275 (18.61/17.07)	SMVVELNQSTTApDL
  279-  292 (21.24/12.63)	SLTLDVAIPTTY.DL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.07|      43|      73|      29|      74|       3
---------------------------------------------------------------------------
   29-   74 (61.79/36.39)	TPENLRLLAALKDKIAERNGSSDPAsiEHLEEpIDQSELLPYEPLL
  105-  147 (74.28/34.96)	TRETTQVFPAGVKRLYDPEPGADPR..PHLRQ.LLVSLLASYHKLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28340 with Med7 domain of Kingdom Fungi
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