<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28326

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDAVIDARFERVEKALAALIDSIAKYNPSLQVGNDLIAAEEELQDGLAQVQRHQENHVHIKNLRDASTALDNQIRGTLVTLSTTRKEMTSTPGTIFPDKQPNEISFDELLSYARRISKTTLPPAGVTNGVVAPPSNDDDQSQQQNQLSSAAPSAAATPNGTAPPTPAPASALTPQPQQQPQTTIASAAASPPSQPAANVLPQDWSNWLNPHTGTLFIPWPQDNQIRIGALSANEILAERGVVIKGFDPVEEERRAAEAAAEAKRREEELAEAERVAMAEREAQARAEMERRREAREREQREALRRGSTALDAGAAASVGLASPTSASPAVKKQFQFMGDDDDDDDSD
Length347
PositionMiddle
OrganismMagnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (Rice blast fungus) (Pyricularia oryzae)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Magnaporthales> Pyriculariaceae> Pyricularia.
Aromaticity0.03
Grand average of hydropathy-0.648
Instability index57.18
Isoelectric point4.74
Molecular weight37431.80
Publications
PubMed=15846337

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP28326
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.48|      26|      27|     249|     274|       1
---------------------------------------------------------------------------
  247-  272 (41.82/21.05)	DPVEEERRAAEAAAEAKRREE....ELAEA
  273-  302 (38.65/18.97)	ERVAMAEREAQARAEMERRREarerEQREA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.35|      20|      27|     162|     182|       2
---------------------------------------------------------------------------
  133-  151 (24.17/ 7.37)	PPSNDDDQSQQQNQ..........lsSAA
  152-  167 (23.23/ 6.85)	PSAAATPNG...........tAPP..TPA
  168-  194 (31.95/12.99)	PASALTPQPQQQPQttiasaaASP..PSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.59|      12|      27|      81|      92|       5
---------------------------------------------------------------------------
   81-   92 (21.11/14.71)	LSTTRK.EMTSTP
  110-  122 (16.49/10.07)	LSYARRiSKTTLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28326 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IRGTLVTLSTTRKEMTSTPGTIFPDKQPNEI
2) LPPAGVTNGVVAPPSNDDDQSQQQNQLSSAAPSAAATPNGTAPPTPAPASALTPQPQQQPQTTIASAAASPPSQPAANVLPQDWS
3) VVIKGFDPVEEERRAAEAAAEAKRREEELAEAERVAMAEREAQARAEMERRREAREREQREALRRGSTALDAGAAASVGLASPTSASPAVKKQFQFMGDDDDDDDSD
74
121
241
104
205
347










Molecular Recognition Features






MoRF SequenceStartStop




1) ISFDELLSYA
2) REALRRG
3) SPAVKKQFQFMGDDDDDDD
104
300
327
113
306
345