<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28275

Description Uncharacterized protein (Fragment)
SequenceSEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEERKEEEELGYDDDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVSQNVVSTGGHIAVGQHGVGSMKDPSHCGMPLTPPTSPEQAIIGESGGPPSAIGHLAAQEGMATMHSPKRSGEIPPKLHSHMVHRVWKECILNRTQLKRSQVSAPHLEEEASSESPPPPSWGFVDPAQRASCSCSRHKLFKQRCAVGPSRPTSISQPGFAVGPPSSSSLPPPASSKHKTTERQEKGDKLQKRPVLPFHHRPSVGEDLCMEQDAPGQKLALAGVDASLEVPSSRKYDKQLAVPSRNTSKQMHLNPMDSPHSPISPLPPTLSPQPRGQEAESLDPPSIPVNPALYSNGLELQPLSNLDDRTVLVGQRLPLMAEVSETALYCGIVPPNYESSDKWHSYHLPPSDDPEFRPPELQGEQYDVMMEINSDSTALKRLLAQPHKRFKIWDDKQPQGQAVYLDPSPRMQ
Length545
PositionMiddle
OrganismSarcophilus harrisii (Tasmanian devil) (Sarcophilus laniarius)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.562
Instability index74.97
Isoelectric point6.03
Molecular weight59961.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28275
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     342.37|      75|     122|     260|     342|       1
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  162-  219 (66.31/18.18)	..................CGMPLTPPTSPEQAiiGESGGPPSA.iGHLA..AQEGMATMHSPKRSGEIP..PKLHSHmvHR
  221-  254 (36.49/ 7.24)	...WKECILNRTQL..KRSQV........SAP..HLE.EEASS..ES.PPPPS............................
  260-  334 (138.21/58.63)	PAQRASCSCSRHKLFKQRCAVGPSRPTSISQP..GFAVGPPSS..SSLPPPASSKHKTTERQEKGDKLQKRPVLPFH..HR
  355-  424 (101.35/34.73)	AGVDASLEVPSSRKYDKQLAV.PSRNTSKQMH..LNPMDSPHSpiSPLPPTLSPQPRGQE.AESLDP.PSIPVNP......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28275 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVGPSRPTSISQPGFAVGPPSSSSLPPPASSKHKTTERQEKGDKLQKRPVLPFHHRPSVGEDLCMEQDAPGQKLALAGVDASL
2) DKWHSYHLPPSDDPEFRPPELQGEQYDVMM
3) IAVGQHGVGSMKDPSHCGMPLTPPTSPEQAIIGESGGPPSAIGHLAAQEGMATMHSPKRSGEIPPKLH
4) LKRSQVSAPHLEEEASSESPPPPSWGFVDPA
5) VPSSRKYDKQLAVPSRNTSKQMHLNPMDSPHSPISPLPPTLSPQPRGQEAESLDPPSIPVNPALY
279
474
146
231
363
361
503
213
261
427










Molecular Recognition Features






MoRF SequenceStartStop




1) RLLAQPHKRFKIWDDKQPQGQAVYLDPSPRMQ
514
545