<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28235

Description Mediator complex subunit 25
SequenceQSPGLTVGGLVGGQQSVSNKLLAWSGVLEWQEKRRPYSDSSAKVKRMLPCQAYVNQGENLRTDKWPQKLIMRLTPQQLLGEAPAFPENSPAGNSSHFTNRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAVGPGGVNAGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHIYVNQGEILRTEQWPRKLSMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFPYKASCEVRVLTLLYSSEKRIFIGLIPHDQSNFVNGIRRVIANQQQVLQRNLEQEQQQRGV
Length344
PositionUnknown
OrganismLoxodonta africana (African elephant)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Afrotheria> Proboscidea> Elephantidae> Loxodonta.
Aromaticity0.08
Grand average of hydropathy-0.330
Instability index54.38
Isoelectric point9.82
Molecular weight38918.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28235
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.79|      14|      36|      77|      90|       1
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   77-   90 (25.75/12.49)	QLLGEAPA....FPENSP
  110-  127 (25.04/11.99)	RVMGNGFAgcmlFPHISP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     436.29|     125|     160|       8|     167|       2
---------------------------------------------------------------------------
    8-  167 (212.58/176.73)	GGLVGGQ.QSVSNKLLAWSGVLEWQEKrRPYSDSsaKVKRMLPCQAYVNQGENLRTDKWPQKLIMRLTPQqllgeapafpenspagNSSHFTnRDCDSLKGLCrvmgngfaGCMlfphispCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRK
  173-  328 (223.72/164.50)	GGVNAGPvQIVNNKFLAWSGVMEWQEP.RPEPNS..RSKRWLPSHIYVNQGEILRTEQWPRKLSMQLIPQ.qllttlvplfrnsrlVQFHFT.KDLETLKSLCrimdngfaGCVhfpykasCEVRVLTLLYSSEKRIFIGLIPHDQSNFVNGIRRVIANQQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28235 with Med25 domain of Kingdom Metazoa
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