<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28229

Description Uncharacterized protein
SequenceAGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQATTPAAAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGEVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWGPTGPATSNPSSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length492
PositionTail
OrganismLoxodonta africana (African elephant)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Afrotheria> Proboscidea> Elephantidae> Loxodonta.
Aromaticity0.07
Grand average of hydropathy-0.316
Instability index38.60
Isoelectric point5.53
Molecular weight53270.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28229
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     370.68|      40|      40|     300|     339|       1
---------------------------------------------------------------------------
  137-  172 (35.88/16.40)	..........PNKatVLRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTAR
  191-  228 (43.10/21.10)	HCirEGGHDVP....S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFAR
  229-  258 (30.90/13.15)	I...WTEDGNLAS..TLGQHKGP...........IFALKWNKKG..........nY............
  259-  310 (44.42/21.97)	IL..SAGVDKTTI..IWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIH
  311-  352 (63.36/34.31)	VC..RLGCDRPVK..TFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLK
  353-  403 (57.82/30.70)	IW..SMKQDACVH..DLQAHSKE...........IYTIKWGPTGpatsnpssnimL.ASAS.FDSTVR
  407-  445 (49.57/25.32)	VE..RGVC...IH..TLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVH
  446-  487 (45.63/22.76)	IW..NTQSGSLVH..SYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.73|      17|      21|      95|     111|       3
---------------------------------------------------------------------------
   95-  111 (27.53/17.95)	A.AVSQQNTPKNGEATVN
  117-  134 (24.20/14.93)	AhAINNHSKPMEIDGEVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28229 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RQQAFREKLAQQQATTPAAAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGEVEIPPNKA
77
140










Molecular Recognition Features






MoRF SequenceStartStop




1) IYTIKW
372
377