<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28221

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERFREGLEAGTLAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEACMSPEPRFPSCFCISFSPPASWTAIEHSLLKLGEILANLSNPQLRSQAEQCGALIRSIPTMLSVHSEQLHKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTDFLLQECSKQGLLSEASMTNLVAKRTADREHAPQLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIHLNEFTTHGNEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANILSSPTDRSMSSSLSASQLHKVNMRDPLNRVLANLFLLISSILGSRSAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length1008
PositionTail
OrganismLoxodonta africana (African elephant)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Afrotheria> Proboscidea> Elephantidae> Loxodonta.
Aromaticity0.07
Grand average of hydropathy0.022
Instability index50.04
Isoelectric point6.36
Molecular weight112409.65
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28221
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     322.65|     102|     115|     113|     225|       1
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  113-  225 (150.67/96.79)	KAEECIGLCRALLSALHwlLRCTAASAERFReGLEAGTLAAGEKQLAMCLQRLEKTLSSTKNraLLHIAkleeACMSPEPRFPSCFCISFSPPAS.....WTAIehSLLKLGEILANL
  233-  339 (171.98/84.25)	QAEQCGALIRSIPTMLS..VHSEQLHKTGFP.TVHAVVLLEGTMNLTGETQPLVEQLMMVKR..MQHIP....TPLFVLEIWKACFVGLIESPEGteelkWTAF..TFLKIPQVLVKL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.00|      11|      15|     733|     743|       2
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  733-  743 (20.33/14.46)	IFAKVLEKGWV
  750-  760 (20.68/14.85)	IFDTLLHMGGV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.14|      51|     115|     669|     720|       3
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  669-  720 (86.20/56.47)	LYSENTLQFYNERVVIMSSILEHMCADVlQQTATQIKFPSTGMDTMPYWNLL
  787-  837 (89.94/54.97)	LYSIFCLDMQQVTLVLLGHILPGLLTDS.SKWHSLMDPPGTALAKLAVWCAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.27|      54|      67|     500|     565|       4
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  500-  558 (85.69/83.97)	ESTKPASVRALLFDISFLMLChvaQTYGSEVILSESSTGAEVpfFETWMQTCMPEEG..KI
  569-  624 (86.58/51.91)	DSTKVESLVALLNNSSEMKLV...QMKWHEACLSISAAILEI..LNAWENGVLAFESiqKI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.29|      32|      67|     390|     425|       5
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  390-  425 (47.95/40.85)	G.LLSEASMTNLVAKRTAdrehAPQLKSAENANIQPN
  459-  491 (48.34/30.54)	GhMLSGKSLDLLLAAAAA....TGKLKSFARKFIHLN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.10|      23|     266|      87|     110|       6
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   87-  110 (40.81/27.67)	DFSRDL.C.......VQALLDIMDMFCDrLSC
  348-  378 (35.29/19.13)	DFTEDVnCafefllkLTPLLDKADQRCN.CDC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28221 with Med24 domain of Kingdom Metazoa
Unable to open file!