<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28201

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERFREGLEAGTLAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASLHTSQGLGQGGTRANQPTASWTAIEHSLLKLGEILANLSNPQLRSQAEQCGALIRSIPTMLSVHSEQLHKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTDFLLQECSKQGLLSEASMTNLVAKRTADREHAPQLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIHLNEFTTHGNEESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESSTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEEDANILSSPTDRSMSSSLSASQLHKVNMRDPLNRVLANLFLLISSILGSRSAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length1008
PositionTail
OrganismLoxodonta africana (African elephant)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Afrotheria> Proboscidea> Elephantidae> Loxodonta.
Aromaticity0.07
Grand average of hydropathy-0.000
Instability index46.87
Isoelectric point6.44
Molecular weight112187.15
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28201
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     264.07|      81|     115|     635|     720|       1
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  635-  720 (126.39/106.76)	LAVCAVAWLVAHV..RMLGLDEREKSLQMIrQLagpLYSENTLQFYNERVVIMSSILEHMCADVlQQTATQIKFPSTGMDTMPYWNLL
  755-  837 (137.68/97.20)	LHMGGVYWFCNNLikELLKETRKEHTLRAV.EL...LYSIFCLDMQQVTLVLLGHILPGLLTDS.SKWHSLMDPPGTALAKLAVWCAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.27|      54|      66|     500|     558|       2
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  500-  558 (85.69/73.25)	ESTKPASVRALLFDISFLMLChvaQTYGSEVILSESSTGAEVpfFETWMQTCMPEEG..KI
  569-  624 (86.58/58.25)	DSTKVESLVALLNNSSEMKLV...QMKWHEACLSISAAILEI..LNAWENGVLAFESiqKI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.24|      25|      66|      92|     116|       3
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   92-  116 (45.63/27.71)	LCVQALLDIMDMFCDRLSCH.GKAEE
  120-  140 (35.03/19.54)	LC.RALLSALHWL...LRCT.AASAE
  160-  185 (34.57/19.19)	MCLQRLEKTLSSTKNRALLHiAKLEE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.29|      32|      68|     390|     425|       4
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  390-  425 (47.95/46.32)	G.LLSEASMTNLVAKRTAdrehAPQLKSAENANIQPN
  459-  491 (48.34/34.60)	GhMLSGKSLDLLLAAAAA....TGKLKSFARKFIHLN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.38|      29|      30|     320|     349|       5
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  320-  349 (45.89/37.19)	EELKwTAFTF.LKIPQVLVKLKKYSHGD.KDF
  351-  381 (45.49/30.07)	EDVN.CAFEFlLKLTPLLDKADQRCNCDcTDF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.27|      23|     187|     723|     747|       6
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  723-  747 (35.34/31.06)	KRPIKEVLTDIFakVLEKGWVDSRS
  913-  935 (37.92/26.30)	RDPLNRVLANLF..LLISSILGSRS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.98|      20|      31|     196|     215|       7
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  196-  215 (35.67/22.67)	QGGTRANQPTASWTAIEHSL
  229-  248 (34.32/21.54)	QLRSQAEQCGALIRSIPTML
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28201 with Med24 domain of Kingdom Metazoa
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