<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28165

Description Mediator complex subunit 25
SequenceMVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPFSHLPPAPLQEGARVFGALGPIGPSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRKQAVGPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRWLPSHVYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGVRWPGSRAAQSPSTPLPAHHWPLISFHRWGGSGYPGLGPSRSHR
Length448
PositionUnknown
OrganismGorilla gorilla gorilla (Western lowland gorilla)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Gorilla.
Aromaticity0.09
Grand average of hydropathy-0.352
Instability index54.32
Isoelectric point10.55
Molecular weight50510.95
Publications
PubMed=22398555

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28165
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.63|      20|      23|     110|     129|       1
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  110-  129 (38.63/22.46)	LPCQAYVNQGENLETDQWPQ
  136-  155 (36.69/20.99)	IPQQLLTTLGPLFRNSQLAQ
  272-  291 (36.37/20.75)	LPSHVYVNQGEILRTEQWPR
  298-  317 (33.94/18.92)	IPQQLLTTLVPLFRNSRLVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     389.32|     114|     159|      70|     228|       2
---------------------------------------------------------------------------
   70-  228 (188.98/140.35)	GGLAVSEHRL.SNKLLAWSGVLEWQEKrRPYSDStaKLKRtlpcqayvnqgenletdqwpqKLIMQLipqqllttlgplfrnsqlaqFHFTnRDCDSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVSAIRQVITTRK
  234-  389 (200.34/132.44)	GGVNSGPVQIvNNKFLAWSGVMEWQEP.RPEPNS..RSKRwlpshvyvnqgeilrteqwprKLYMQLipqqllttlvplfrnsrlvqFHFT.KDLETLKSLCRIMDNGFAGCVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.15|      36|     372|      30|      67|       3
---------------------------------------------------------------------------
    2-   26 (40.79/13.44)	..VRPRR...........APY...........RSGAG..GPLGGRGrPPRP
   30-   65 (72.70/36.92)	RAVRSRSWPFS...HLPPAPL...........QEGARVFGALGPIG.PSSP
  403-  443 (37.66/13.94)	RGVR...WPGSraaQSPSTPLpahhwplisfhRWGGSGYPGLGP.......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28165 with Med25 domain of Kingdom Metazoa
Unable to open file!