<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28133

Description Uncharacterized protein
SequenceMTTVAATPQQMRDRLLQAIDSHSNICNMVAVLEVISFLEKYPITKEALEETRLGKLINDVRKKTKNEDLAKRSKKLLRTWQKLIEPGPAVAASAPGSTNGSSHPCRTDASPPDILVSGKGVPEVKIRNDVHNTYSPKAEKSSSRKRRADPRDSGVHLLEKISKMSSFDVSVSPPPTNGIAGSPDVVPDQQVTSSPDKSRLEHLDNDKINRIPVNAVKPRPSSPGVAKLPSTSSMIKVAVMQQQTRLDEGGGGGYYKAKSPRGLTSSPRTVKQETIKQRSSTFGPKGTPTPSPSSMDSPLSLSQPVSSPTQAASADKLPNSSHRSSMHWTSSSEVPSYCSPQDISSTLESPSVSPLPSRPQHNSELHRPTSEGAMPVSDDPDGTPVPHSEHKKRKYRPRDYSVNLDGQKIEDTSKPVRLKERRLTFDPVTGQIKPLVHREPSQTEDASTPDLAESRQRTESTVQQPAAPILPNPFLQTNWKELSRNEIIQSYLNLQSNVLTSSGVQAPSAHFFMSQYLKREEQEIKDSRKRHVLQTDGAVEDLPGLSREVTDEDLDRVQTQHWPGVNGCHDTEGAWYDWTECISLDPHGDESKLNILPYVCLD
Length602
PositionUnknown
OrganismGasterosteus aculeatus (Three-spined stickleback)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Perciformes> Cottioidei> Gasterosteales> Gasterosteidae> Gasterosteus.
Aromaticity0.04
Grand average of hydropathy-0.796
Instability index67.46
Isoelectric point8.33
Molecular weight66277.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28133
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     382.61|      69|      69|     154|     222|       1
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   73-  140 (66.41/25.18)	SKKLLRTWQKLIE...PGPAVaasAPG...ST....NG...SshpcrtdASPPDIlVSGKGVPEV................KIRNDVHNTYSPKAEK
  154-  222 (111.10/46.75)	GVHLLEKISKMSS...FDVSV...SPP...PT....NG...I.......AGSPDV.VPDQQVTSSPDKSRLE....HLDNDKINRIPVNAVKPRPSS
  224-  294 (89.18/36.17)	GVAKLPSTSSM.....IKVAV...MQQ...QTrldeGG...G.......GGYYKA.KSPRGLTSSPRTVKQE....TIKQRSSTFGPKGTPTPSPSS
  298-  344 (49.35/16.95)	.................PLSL...SQPvssPT....Q............AASADK.LPN.....SSHRSSMH....WTSSSE...VP.SYCSPQDIS
  345-  415 (66.56/25.25)	STLESPSVSPLPSrpqHNSEL...HRP...TS....EGampV.......SDDPDG.TPVPHSEHKKRKYRPRdysvNLDGQKIE....DTSKP....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.60|      27|      41|     458|     484|       2
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  458-  484 (49.50/30.49)	TESTVQQPAAPILPNPFLQTNWKEL..SR
  500-  528 (43.10/25.63)	TSSGVQAPSAHFFMSQYLKREEQEIkdSR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28133 with Med26 domain of Kingdom Metazoa
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