<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28127

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMELAYVCEWEKRPKSTHCPSIPLVCSWSCRNLVAFTTDLKSDDEDDKDVSHMIHIIDTEHPWDVYSISSGHTEVISCLEWDQSGSRLLSADGNGQIKCWSMADHLVNSWESLLSSSLDGDPIVALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPGGALLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVVVSVVSEKCRIDTELLPSLFLRCTTDPLRREKYPAVTHLKFLTRENSEQQVLLCASNQSGSIVECWSLRKEGLPVNNIFQHRSPVVGEKQPTILKWRILTTTSDLERVSAVALPKLPISISNTDLKVASDTKFCPGLGLALAFHDGSIQILHRLSLQTMGVFYGSSSSSGQRPGDESAMKRQRTGGPALHFKALQFSWTSLALAGVDNHGKLHMMRVSPSMGQVLEMNTTLRHLLFLLEYCMVTGYDWWDVLLHVQPSMVHNLVEKLHEEYMRQNQALQQVSVSWQVKAMRLCKLSTARAARACDFHAKLLLIPPWCPLTTYLRDPLDTRTHLCVSSDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSMVRPGFGFMRDGASLAMLREMLVMIRIWGLLKPGCLPTFTATSDNQDSMQLLFRLLTKLWLCCKAPPSVLLIQT
Length693
PositionTail
OrganismGasterosteus aculeatus (Three-spined stickleback)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Perciformes> Cottioidei> Gasterosteales> Gasterosteidae> Gasterosteus.
Aromaticity0.07
Grand average of hydropathy0.021
Instability index40.77
Isoelectric point7.27
Molecular weight76983.36
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28127
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.25|      57|     172|     421|     479|       1
---------------------------------------------------------------------------
  421-  479 (98.22/73.57)	GPALhfKALQ..FSWTS....LALAGVDNHGKL.....HMMRVSPSMGQVLEMNTTLRHLLFLLEYCMVT
  590-  657 (90.03/60.09)	GPPL..QSLQqlIQWVGdfvlYLLANLPNQGSMvrpgfGFMRDGASLAMLREMLVMIRIWGLLKPGCLPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     317.32|     112|     172|     107|     231|       2
---------------------------------------------------------------------------
  107-  231 (157.80/123.84)	NSWES.LLSSSLDGDPIVAlSW.L.HNGVKLAlHVEMSGSTNFGEKFSRV.KFsPSLTlfGGKPMEGWLAVTVSGL.VTVSllkpGGALLTASES.LCRlrGrVALAdIAFTGGG.....NIVVAATD...GSSSSPVQ
  281-  406 (159.52/88.71)	NSEQQvLLCASNQSGSIVE.CWsLrKEGLPVN.NIFQHRSPVVGEKQPTIlKW.RILT..TTSDLERVSAVALPKLpISIS....NTDLKVASDTkFCP..G.LGLA.LAFHDGSiqilhRLSLQTMGvfyGSSSSSGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.34|      13|     423|     250|     262|       3
---------------------------------------------------------------------------
  250-  262 (25.17/14.03)	LLPSLFLRCTTDP
  674-  686 (27.17/15.71)	LLTKLWLCCKAPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28127 with Med16 domain of Kingdom Metazoa
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