<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28117

Description Uncharacterized protein
SequenceMADRNLVWELKRWATEEFNLPPDSLPNDGYFKTLCIGTGKSIWRYVIQHVFQQRNVRVVRGNLQWYKVLQDKELKHAEGQSDAAKQRELQSKIEQLRAEISHLDSQLSGTEEQLATQEQSISRTWAQVEDSRRRELLMQAYRQRCILGRRVLSADTQKVNGHCQALEELARKAEIEVLFDDKPPSSRDVDNLDSQGAAEAQVLRDVRELCDDRVHFYQSLQESELKTANSAAKHITREQRTAVFEYWLSAVENMLCGYPPNHVLSALEYLASREQKELEEKLASLDVAQDVSALRFRYESNHLLDVSTEEDNDLPSVKTLLEDAWEEVEQSLVELAQTRSRVQQLQSQLQARKKTAELEVSGIADRSALEVELQCVMQAAARDQIRDRCIQLDLHAKSRQEALRKLHSQWQSILDFRQQVVLRQKHIRGLIKGNSTAKRELICLHTELQEFVQGKLVPQLEVVTTAGGTQRNSISREARQFGTISLLALDRRTVDGMQRIPASWLSIHRLQSPTFSSLCQNLAFPLYRAPEELCSHACAQQLELRFLRQSLQLYAVTSQKIQKETELLHASDQKALLSRVLEEDQKLLDALVQRVRCLTQRCTQGLSYGVQVKTAISYWWDRPAQHVLPDVNKGGLTFQQWLQKWKLAAKAS
Length652
PositionMiddle
OrganismGasterosteus aculeatus (Three-spined stickleback)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Perciformes> Cottioidei> Gasterosteales> Gasterosteidae> Gasterosteus.
Aromaticity0.06
Grand average of hydropathy-0.540
Instability index54.65
Isoelectric point6.98
Molecular weight74932.07
Publications









Function






Annotated function


GO - Cellular Component
HAUS complex	GO:0070652	IEA:InterPro

GO - Biological Function
GO - Biological Process
spindle assembly	GO:0051225	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28117
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.34|      75|      98|     143|     222|       1
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  143-  219 (126.41/101.16)	QRCILGRRVLSADTQKVNG....HC.QALEELARKAEIEvlFDDKPPS...SRDVDNLDSQ.........GAAEAQVLRDVRELCDD.................RVHFYQS
  239-  347 (92.93/60.67)	QRTAVFEYWLSAVENMLCGyppnHVlSALEYLASREQKE..LEEKLASldvAQDVSALRFRyesnhlldvSTEEDNDLPSVKTLLEDaweeveqslvelaqtrsRVQQLQS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     389.51|     103|     383|      40|     142|       2
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   40-  140 (158.18/84.55)	.............KSIWRY....VIQHVF.QQRNVR.VVRGN.............LQWYKVLQDKELKHAEGQSDA.AKQRELQSKIEQLRAEIS..HLDSQLSGTEEQLATQEQSISRTWAQVEDSRRRELLMQA
  348-  396 (46.87/20.12)	.................................................................................QLQARKKTAELEVS..GIADR.SALEVELQCVMQAAARD..QIRD.RCIQLDLHA
  398-  526 (123.69/64.58)	SRqealrklhsqwQSILDF....RQQVVL.RQKHIRgLIKGNstakreliclhteLQEF..VQGKLVPQLEVVTTAgGTQRNSISREARQFGTISllALDRRTVDGMQRIPASWLSIHRLQSPTFSSLCQNLAFPL
  527-  589 (60.77/28.16)	YR.................apeeLCSHACaQQLELR.FLRQS.............LQLYAVTSQKIQKETE.LLHA.SDQKALLSRV..LEEDQK..LLD....................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28117 with Med4 domain of Kingdom Metazoa
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