<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28110

Description Uncharacterized protein
SequenceMTAAAATPLVMRDRLLQAIDGQSNICNMVVVMEVISFLEKYPITKEPLGALRETRLGKLINDVRKKTKNEDLAKRAKKLLRNWQKLIEPGKGEVLSKGHGGASWSSNGVAHPFISTTTATIPSGKTGPELKNRNDFNNCYSPRVEKTSNRKRKVDQKEGPLIPAKISKTTLNDKMQNIKQLATNGIGGSSEITDSRAHQSLDREISEPLDNDRVNKIPVNAVKPHPSAPGHIKPPSTSSLLKASVLQQQARQEKAFSGGLNRPRSPRCSLHSSPQTPKQEAGMKATASPVQALSSPGVRPASVETSGMEPSIQPFNACVQGLHTGCSDLDSPSRPPSTSLHKSYASSCSDVRRLEDEDGEVSKIETRKRQKYRSKDHVMSLDEQNIDDGTKPVRLKDRRLTFDPVTGQIKSFQKESSQEEGVRQVPRPETQRSEQPKQTPPVPPSPFQQTDWKELSRSDIIQSYLSQQSNVLTSSGANTPGAHFFMTEFLKKEEPRSTDFKQTHVLAPEPPVIDLPGVSREVIKEDLTRLHKQHWSGVNGCYDTKGAWYDWTECISLDLHGDESRLNILPYVCLD
Length575
PositionUnknown
OrganismGasterosteus aculeatus (Three-spined stickleback)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Perciformes> Cottioidei> Gasterosteales> Gasterosteidae> Gasterosteus.
Aromaticity0.05
Grand average of hydropathy-0.771
Instability index61.62
Isoelectric point9.20
Molecular weight63720.20
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28110
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     315.89|      85|      98|     146|     242|       1
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   57-  144 (99.50/59.93)	...............GKLINDVRKKTKNEDLAKRAKKLLRNwqkliepgkgevlskGHGGASWSSNGVAH.........PFISTTTATIPSGKTGPELKNRNDFNNCYSPRV
  147-  240 (135.16/109.69)	TSNRKRKVDQKE...GPLIPAKISKTTLNDKMQNIKQLATN...............GIGGSSEITDSRAHqsldreisePLDNDRVNKIPVNAVKPHPSAPGHIKPPSTSSL
  243-  302 (81.23/46.67)	ASVLQQQARQEKafsGGLNRPRSPRCSLHSSPQTPKQEA.................GMKATAS..........................PVQAL....SSPG.VRPAS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.81|      60|      62|     427|     488|       2
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  427-  488 (100.56/66.60)	RPETQRSEQPKQTPPVPPSPfQQTDWKELSRsDIIQ...SYLSQQSNVLTSSGANTPGAHFFMTE
  491-  553 (107.25/62.62)	KKEEPRSTDFKQTHVLAPEP.PVIDLPGVSR.EVIKedlTRLHKQHWSGVNGCYDTKGAWYDWTE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.07|      19|      19|     310|     328|       3
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  310-  328 (37.46/24.94)	PSIQPFNACVQGLHTGCSD
  332-  350 (35.61/23.33)	PSRPPSTSLHKSYASSCSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28110 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PVTGQIKSFQKESSQEEGVRQVPRPETQRSEQPKQTPPVPPSPFQQTDWK
2) STTTATIPSGKTGPELKNRNDFNNCYSPRVEKTSNRKRKVDQKEGPLIPAKISKTTLNDKMQNIKQLATNGIGGSSEITDSRAHQSLDREISEPLDNDRVNKIPVNAVKPHPSAPGHIKPPSTSSLLKASVLQQQARQEKAFSGGLNRPRSPRCSLHSSPQTPKQEAGMKATASPVQALSSPGVRPASVETSGMEPSIQPFNA
3) VQGLHTGCSDLDSPSRPPSTSLHKSYASSCSDVRRLEDEDGEVSKIETRKRQKYRSKDHVMSLDEQNIDDGTKPVRLKDRRLTF
404
115
319
453
317
402










Molecular Recognition Features






MoRF SequenceStartStop




NANANA