<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28098

Description Transducin beta like 1 X-linked
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFRDKLAQQQASCATAASTSGNQPSASKNGEAPVNGEENGTHSMNNHSEPMEMDVDVEIPASKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENNNSNSTQLVLRHCIREGGQDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNSILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGSDRPLKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQESCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVERGICIHTLTKHQEPVYSVAFSPDGKHLASGSFDKCVHIWNTTNGALVHSYRGTGGIFEVCWNSPGDKVGASASEGSVCVLDLRK
Length513
PositionTail
OrganismGasterosteus aculeatus (Three-spined stickleback)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Perciformes> Cottioidei> Gasterosteales> Gasterosteidae> Gasterosteus.
Aromaticity0.07
Grand average of hydropathy-0.339
Instability index38.04
Isoelectric point5.34
Molecular weight55712.39
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28098
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     355.33|      40|      40|     321|     360|       1
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  164-  197 (38.86/15.80)	..LRGHESEVFICAWNPVS.........dlLASGS.GD...........STARIWNL......
  223-  257 (40.03/16.46)	.S....NKDVTSLDWNSDG.........tlLATGS.YD...........GFARI.W.TKDGNL
  259-  300 (50.32/22.26)	STLGQHKGPIFALKWNKKG.........nsILSAG.VD...........KTTIIWDAHTGEAK
  301-  341 (55.98/25.44)	QQFPFHSAPALDVDWQNN..........ttFASCS.TD...........MCIHVCRLGSDRPL
  342-  383 (60.56/28.02)	KTFQGHTNEVNAIKWDPSG.........mlLASCS.DD...........MTLKIWSMKQESCV
  384-  435 (27.30/ 9.29)	HDLQAHSKEIYTIKWSPTGpgtsnpnsnimLASAS.FDstvrlwdvergICIH..........
  436-  476 (54.54/24.63)	.TLTKHQEPVYSVAFSPDG.........khLASGS.FD...........KCVHIWNTTNGALV
  477-  508 (27.75/ 9.54)	HSYRG.TGGIFEVCWNSPG........dkvGASASeGS...........VCV...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28098 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SCATAASTSGNQPSASKNGEAPVNGEENGTHSMNNHSEPMEMDVDVEIPASK
109
160










Molecular Recognition Features






MoRF SequenceStartStop




NANANA