<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28081
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSQPAAAARSPLQEAVQYWSDFVARCIAQRLGSERFHDFVRLVHAQHPLPPILVADLFLRPQPSNRVSLDPRVPPYVRVLTQLGYMDAPSILRVMYKYSALHALAKPSPEVKTEEAGDKTVRWQESSWAEEVMFYHVIKTMFEGTAFTDAKTGLELVGITCKWMDLFVQTFAAEALVGTHDRQAREEMVTVRAALAPLLLRLVDNEALLRIISLRKHLSDSLGHFIQTFQPAPLYLERLEIFRTQTLAQLDPVDEKKQAANAAMDELLDSTVGLESFVVADIPIANSRAALYIYLNAALVGRPVLDDSMLYAFLNNKYQENQQASAVDLIVASFDVLANAVFRNEGPKDAHLLRSFVVNKLPLLLCQLCHPEFSATSAEFCITEALSRVDTGIFPTASLMFDESRNNNPYMDSVREEFCAACALHGLIERDHVDRILGETSMSYDPSLERVNRDRLVGDCLSDSAKIQSIISQLDRVDGNVGAVAHAVVEDTMSLKLLCTQLAQKPQSLDIILLFDKVTSILEPVCSLLDNWRYEEDQGEYQPVYEEYGAILLLVFAFSYRYNLSPLDIGIHSADSHVARIITKSHILRPLDELSEQESEHVTGWINGLFDNEAGGLGDDLMSSCPPHEFYLLVAPIFQSIITAYTYGYINDESLKGGVEYLVDTFLLPSLVPAIRFLSDYIWIDQKEQKSIVKALQLLLTPSSISGEASTVLSAVKNLVAQPLEHALRTYQRQDPRNQDIEPLLRSLKENLPLSRRSGGAAHHEMELWANSSSSGLSGAIRHTIQGLVQWSAQPGVNVMPASYTHRQLIAGLRIIGPSRLLRLVMEEIRQQSELGNASVVYDVAAALIAATDSTNEAPASTQHLLDTAGTMQVRRRGLRDALKTAAEGYKRLQKHDPFLAEATVRLHRRVEGLLLVVVVVPQAQAILPALDLGDADADAAAAAAMAAVGADPMSVDGLDMGLGADLDLSGGAGDADLFGGLDTSLDMFDGWDSMDMGVN |
Length | 1001 |
Position | Tail |
Organism | Cordyceps militaris (strain CM01) (Caterpillar fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Cordycipitaceae> Cordyceps.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.014 |
Instability index | 45.45 |
Isoelectric point | 4.95 |
Molecular weight | 110374.53 |
Publications | PubMed=22112802
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP28081
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 77.83| 28| 35| 929| 963| 1
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929- 963 (46.59/42.54) LPA.LDL..GDADADAAAaaamaavGAD.PMSV.DG...LDMG
964- 999 (31.24/16.29) LGAdLDLsgGAGDADLFG.......GLDtSLDMfDGwdsMDMG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.55| 14| 18| 749| 765| 3
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761- 777 (21.66/ 9.66) GAAHHemeLWAN....SSSSG
780- 797 (18.89/13.45) GAIRH...TIQGlvqwSAQPG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.23| 12| 15| 726| 737| 4
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726- 737 (22.08/13.43) EHALRTYQRQDP
743- 754 (20.15/11.62) EPLLRSLKENLP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.54| 18| 20| 314| 331| 8
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314- 331 (29.79/17.57) F..LNNKYQENQQASAVDLI
335- 354 (25.74/14.31) FdvLANAVFRNEGPKDAHLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.26| 16| 37| 372| 387| 12
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372- 387 (28.42/18.69) PEFSATSAEFCITEAL
410- 425 (30.84/20.88) PYMDSVREEFCAACAL
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