<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28072

Description "C-type cyclin (Fic1), putative"
SequenceMEPQAALAARVTQAPAVVSTSSRFASLGTFWADYGAASAWKQTHKGSLPRTLSRKSSPFLGRCDMARHLATGLAGSATRRSHGNMEGNLGTLQFVALENRFVPIIGGVFLAYRQQRQSKRAPSHAIGRHPRSRQAPIGSVIHFQPTPMSANYWDSTQRRYWLFTKDQLNTMRTKLEQDNIDLVRMFPLSQPRHLAIFFNQQLIRLGKRLTIRQQAMATAQVYLKRFYSHVEIRRTNPYLVITTAIYLACKMEESPQHIRLIVTEARQLWQDFIGLDTSRIGECEFFLISEMSSQLIVHQPYRSLTSLRSELALVDEDVQLAKSVINDHYMTDLPVLFPPHIIALVAVLLALVLRPNSVTPGQQGAGAAAAAGLAAAQAALSHAQGGLFTPAGSMAGLPLPLSSAVSGLEAREKQQEARITRVQHFAAWLAESTVDISSMVDATQEIISFYECYEKYNEKLTREQINRFVKAGSLDR
Length476
PositionKinase
OrganismCordyceps militaris (strain CM01) (Caterpillar fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Cordyceps.
Aromaticity0.08
Grand average of hydropathy-0.155
Instability index54.85
Isoelectric point9.79
Molecular weight53031.23
Publications
PubMed=22112802

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28072
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     203.63|      65|     120|       3|      70|       1
---------------------------------------------------------------------------
    3-   70 (102.41/74.31)	PQAALA..ARVTQAP..AVVSTSSRFASlGTFWaDYGAASAWKQThKGSLP..RTLSRKSSPFLGR...CDMARHLA
  122-  195 (101.22/60.95)	PSHAIGrhPRSRQAPigSVIHFQPTPMS.ANYW.DSTQRRYWLFT.KDQLNtmRTKLEQDNIDLVRmfpLSQPRHLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.89|      45|     297|      72|     120|       2
---------------------------------------------------------------------------
   72-  120 (67.94/48.12)	GLAGSATRRSH..GNMEGNLGTLQFVALEnrFVPIIGGvfLAYRQQRQSKR
  372-  418 (69.95/38.37)	GLAAAQAALSHaqGGLFTPAGSMAGLPLP..LSSAVSG..LEAREKQQEAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28072 with CycC domain of Kingdom Fungi
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