<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28058

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSALTRNRNFCNLKVLKRRQTNKNKGGSHLIETKTSSPQGEAKMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQANAAAAAAAGAAATATTTAATTPAAAAQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLSCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDVCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length571
PositionTail
OrganismCricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Myomorpha> Muroidea> Cricetidae> Cricetinae> Cricetulus.
Aromaticity0.07
Grand average of hydropathy-0.340
Instability index41.61
Isoelectric point6.02
Molecular weight61756.30
Publications
PubMed=21804562

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP28058
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     394.44|      40|      40|     379|     418|       1
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  216-  251 (34.43/15.39)	........PSKatVLRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTAR
  270-  307 (47.29/23.64)	HCIREGGHDVP..S....NKDVTSLDWNSDG.........tlL.A.TGS.YDGFAR
  308-  348 (46.40/23.06)	I.WTEDGNLAS..TLGQHKGPIFALKWNKKG..........nY.IlSAG.VDKTTI
  349-  389 (53.37/27.53)	IWDAHTGEAKQ..QFPFHSAPALDVDWQNN..........ttF.A.SCS.TDMCIH
  390-  431 (60.60/32.17)	VCRLSCDRPVK..TFQGHTNEVNAIKWDPSG.........mlL.A.SCS.DDMTLK
  432-  482 (56.84/29.76)	IWSMKQDVCVH..DLQAHSKEIYTIKWSPTGpatsnpnsnimL.A.SAS.FDSTVR
  486-  524 (49.82/25.26)	VERGVC...IH..TLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVH
  525-  566 (45.69/22.61)	IWNTQSGSLVH..SYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28058 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAGAAATATTTAATTPAAAAQQNPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPSKAT
157
220










Molecular Recognition Features






MoRF SequenceStartStop




1) SALTRNRNFCNLKV
2
15