<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28031

Description Mediator of RNA polymerase II transcription subunit 11
SequenceMSNGQFIQQRLDSLNDIDSSIVSLLGYMSDIFDRYSTPSNNSDDAKDTIETQTRLIYQTLSDIAINLRKEVKIMDDNTGVFDKNEDQVMILPIPVDQKNTALGKRRLNEEIDLLTHLIPQEPTEDQKFKPEPETVEEESVKEEPVEEEPVEEEPVKEEQPEEKNGVDDTDEPDPIVKPEADVETFGISDVEMEE
Length194
PositionHead
OrganismCandida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) (Yeast) (Yamadazyma tenuis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Yamadazyma.
Aromaticity0.04
Grand average of hydropathy-0.873
Instability index60.19
Isoelectric point4.06
Molecular weight22140.02
Publications
PubMed=21788494

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364147
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP28031
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.74|      27|      46|       8|      34|       1
---------------------------------------------------------------------------
    8-   34 (46.49/35.05)	QQRL..DSLNDIDSSIVSLLGYMSD...IFDR
   52-   83 (35.25/25.01)	QTRLiyQTLSDIAINLRKEVKIMDDntgVFDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.73|      19|      20|     152|     170|       2
---------------------------------------------------------------------------
  152-  170 (31.66/15.18)	EEPVKEEQPEEKNGVDDTD
  173-  191 (29.07/13.39)	DPIVKPEADVETFGISDVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.15|      10|      20|     118|     132|       3
---------------------------------------------------------------------------
  118-  132 (13.92/14.68)	IPQEPTEDqkfkpEP
  140-  149 (18.23/ 6.62)	VKEEPVEE.....EP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP28031 with Med11 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EIDLLTHLIPQEPTEDQKFKPEPETVEEESVKEEPVEEEPVEEEPVKEEQPEEKNGVDDTDEPDPIVKPEADVETFGISDVEMEE
110
194










Molecular Recognition Features






MoRF SequenceStartStop




1) EPDPIVKPEADVETFGISDVEMEE
2) IVSLLGYMSDIFDRYST
3) PVKEEQPE
171
21
154
194
37
161