<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP28017
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | METIRVDSKSLNHEMKCYDTISWSKNGFIAYSIPSSNSKDNLLLTYLENVDGKKWQLAKPQKLCVKPTLDGFHSPELSLVSWSNLSTDLAVADVYGNFYILLAGVGLVREDSKTTPPGDSGSPSYELTTYNHLEMIYRDIITNQSNQRPNVAVQFVAFAWLPIEKNQIINTEAKLLNSANSSGMSFSYGYGVEQYRPMNLCHPISTKQACIALRTNGELVLHYQGEHKVEYHKLLVNLNEGYSYNLHIEKVAFGFPNEKKIIVVTYDSLSNKIRTYSVTINWGFLVEAASKQKIDPHFNTPKDLQKSPTLSCCLINEMSPNFKSETEESKPSEYKPKQKIGKLAFIEIISPVYDEKDTIDILIGYEFYDENLKVSTTFNRYKILESSRLISDTFGEIGRKKGAVSDGSNIQKEFNLVYQDKLVLPKRVLKSTNQTSDFLVLCEDGSIESIVKKESKATAWSKNGNSSIPESIRSVMDTGFSMGNLHISGKNPLIIAFSPNGIGAIYTEINEPTTNLKLEFVEKTSSTGISAEELYITAVGFAFQHAFACYCSICSDDILILIQLEVERISRLIKKMIPGSQKQLEATDRFIESILCESHKAINFQLDIFNKESVDKLLSNPPLQKLLSLQLILGGLDYRVNDISENIAWIILNLRSTSFGIMFSLSSIYRQISKKKPTEDTMEDSITRAESIISLIGNVRWLVELIICLNEELLQIYISRKHPESSVIDLNNSIVLPVLLSKVPRLFLMYALSSIGKTHEVLKKLNKDLSDSNKLFTPMKDALNRYFTACANSPLNLNLYESFLRECDTYITTETLNLTKTRPKGHILKMEQQLVCDGKVHEDMVKMGQWIVAKFASNIPRDLKVAEMFYYNVDWLDISYKTSIPRHTYTKHGRIDALRKVLIDAKDTSVILRKCTRCRSISLVNDPLVFSNGTLGLWTMVFQRTCICGSAWVNI |
Length | 955 |
Position | Tail |
Organism | Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) (Yeast) (Yamadazyma tenuis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Yamadazyma.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.186 |
Instability index | 39.59 |
Isoelectric point | 7.72 |
Molecular weight | 108013.98 |
Publications | PubMed=21788494
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP28017
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 186.19| 62| 176| 294| 367| 2
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294- 367 (92.60/73.85) IDPHFNTpKDLQ...KSPtlsccLINEMSPNFKSE..TEESKPSEYKpkqkigKLAFIEIISPVYDEKDTIDIL.IGYEF
476- 543 (93.59/49.31) MDTGFSM.GNLHisgKNP.....LIIAFSPNGIGAiyTEINEPTTNL......KLEFVEKTSSTGISAEELYITaVGFAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.04| 12| 434| 23| 36| 3
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23- 36 (21.21/15.01) WSKNGfiAYSIPSS
460- 471 (25.83/12.08) WSKNG..NSSIPES
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 150.86| 46| 84| 640| 685| 4
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640- 685 (77.31/58.03) VNDISENIAWIILNLRSTSFGIMFSLSSIYRQISKKKPTEDTMEDS
727- 772 (73.54/54.80) VIDLNNSIVLPVLLSKVPRLFLMYALSSIGKTHEVLKKLNKDLSDS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.01| 22| 22| 840| 861| 7
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840- 861 (39.84/32.39) VHEDMVKMGQWIVAKFASNIPR
865- 886 (40.17/32.73) VAEMFYYNVDWLDISYKTSIPR
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