Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MTLEVNASNILTHYYKIAHLGSINYTIFTSVTDNHQQLLELELQIRHENPKILITYYNKCLHYFTFGHNKTTGDIDPVELVRQYPNIQLKYSNSITMDQLQNPHKPPATNTGSSEEYIPFENLSFLKAAKKMVLYTLSLNGIVKLFGNYCVTSQDEKTYTILYIDPILFPNGDLMISCVQRAQTKLFNYPSTDVLDEISEYVIYIVPSGIRCHLYDPSEFKNNIVEAGDVENSKLLQLLTLSTGVDFTKDEETITWVKLIPNLKHLNNQTSPISKFIHSVENKKFILWPWKLCLLQLGKFQELPEAPEPTTSSFKNPINLISDYLDFNISNNLKELQLQEEKLQKEQQKQPLTNAAYPSSVPSSNGDVGSAVNIEAVKDIGSIDMSMTTPMGEDLFNLPPSDAFFTKTENGDTVKEEEKSQEEEKPTDDMELDDLFGEDVSSDDDNNNNIQSETIEPETNNKHSSEEDKLDELLDVEVNDMIDKQEQERKPEELEPAYLDIPKDQMITKLTSPDYNDPGAPLPLIPTPFMQSTAPLSSTNPPSTGPNIESGYYPEEVPGNTNTSTVTQSAPSSQMPPQKSIFSPILFNPIIKSNIDTKYGKGGKFYVDRESSIDPDFEKHKRSIRATSVSGFHFNSGKEELKKRRPSLDKVQDSVSSSEESDEDEDMSDDMAISPPLKLNTEDEGSQYFPPVTNTMSGNGTNIRANSVSELHSTNVVLDKPGFNPSGLNTGGFGSPFASSIAKFSTFKAESPLSNHELQPTMSPMDFETAQLQQTPRLLPQTNPIENASKEAITESASPSKILGESSNYLPLILRSINVSTIPNLYLMNNLTTNKFLPNFSINDDDDMENDLEITKSNEMIIKLENLQEFLSFLSPNLVYDLGFSGFQSKLDYYLTRERKHQKPADFIKYQLPPDHFTGRFTSIFPYSYKVNLIEFLRDYRELESEIPLDNQLSFLDDITNDDDFADPRSQYKRLKSLEWDSLTLNDINKTTFDSFKELSYQMQDNVNVSEESYFKLPVVKTRIMKNDNIVNLNSVGLEYWKYLNFSPVQEPKNFQILLFSETFGTRDPTCANEFLDLLSNNYTECNFGNISRVNLSTVETRSDLESISNGVLLVNKDPSMGYNDFYIQANKKLISLVELIKLDLINKTNNFEFDRPLLLLFVNFNDSLNSMLQICKIFRNFKVALAHHQLPLVQIFTKIIPGNLIVKRMHEQTYLKVFSNTKLTKISMNLYNQCPNNLVHSDTSPNTIYTSIVKEPPTKIQFKFMSSGFKDNNFNDDIFLHVAYERSIDKNWFSAAWSDPHGTVTHTKSWYCSSSSQNGNSHYRGQASDIISITDDIWNVSTDFFKHLNDVMNNKVTTSGGKKFLVLTRINSVIPDDELVQWKRLSVKNKEISLIVLSVSQSPKLLFSSDVFGAKDVNGNEPMPFALNSHISQDQTPGSSSEKESIFRQFSASANSSPTTSSGALVTSPSGLSFHSPQQFLNAANFLSPQDHTSGMATSSAMAGGVGPDTVLHEPESDIIGIVPKVPLPSFNSPTRLGMKIGYLIKDWNDLKSSENPQYMVFEVNLLSCSNYWDLDVLMKLILNQYKKLIVLNDILGMRLINGKMMTSQKDNPQVINYKLNGMVPWHIAAVGKSLDYLVHVYVEE |
Length | 1646 |
Position | Kinase |
Organism | Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Debaryomycetaceae> Spathaspora. |
Aromaticity | 0.09 |
Grand average of hydropathy | -0.458 |
Instability index | 46.00 |
Isoelectric point | 4.94 |
Molecular weight | 185973.04 |
Publications | PubMed=21788494 |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP28002 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 29.01| 12| 44| 392| 435| 1 --------------------------------------------------------------------------- 392- 411 (12.54/10.08) GEDLfnlpPSDafftKTEN....G 437- 452 (16.47/29.50) GEDV....SSD....DDNNnniqS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 88.02| 19| 44| 412| 435| 2 --------------------------------------------------------------------------- 412- 430 (33.42/13.85) DTVKEEEKSQEEEK.....PTDDM 483- 506 (25.11/15.83) DKQEQERKPEELEPayldiPKDQM 653- 671 (29.50/10.69) DSVSSSEESDEDED.....MSDDM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 87.40| 27| 40| 144| 172| 4 --------------------------------------------------------------------------- 144- 171 (48.34/30.56) KLFgNYCVTS.QDEKTYTILYI..........DPILFPN 185- 222 (39.05/15.84) KLF.NYPSTDvLDEISEYVIYIvpsgirchlyDPSEFKN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 135.12| 31| 33| 511| 542| 5 --------------------------------------------------------------------------- 511- 542 (59.38/36.62) TSPD.....YND..PGAPlPLIPT..PFMQSTAPLSSTNP...P 544- 577 (39.34/18.88) TGPNiesgyYPEevPGNT....NT..STVTQSAP.SSQMP...P 750- 780 (36.40/16.85) ESPL.....SNH.......ELQPTmsPMDFETAQLQQT.PrllP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 112.65| 36| 232| 48| 122| 6 --------------------------------------------------------------------------- 76- 117 (56.26/67.19) DPVELVRQYpnIQLKYSNSITMDQLQNP......HKPPATNtgssEEY 316- 357 (56.40/15.54) NPINLISDY..LDFNISNNLKELQLQEEklqkeqQKQPLTN....AAY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 36.51| 10| 44| 10| 19| 8 --------------------------------------------------------------------------- 10- 19 (20.23/12.85) ILTHYY.KIAH 52- 62 (16.28/ 8.91) ILITYYnKCLH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 38.05| 10| 77| 624| 633| 10 --------------------------------------------------------------------------- 624- 633 (19.43/12.29) IRATSVSGFH 703- 712 (18.61/11.46) IRANSVSELH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.04| 12| 46| 675| 686| 11 --------------------------------------------------------------------------- 675- 686 (23.38/14.59) P...PLKLNTEDEGS 721- 735 (19.65/10.89) PgfnPSGLNTGGFGS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.38| 23| 48| 987| 1011| 14 --------------------------------------------------------------------------- 1002- 1044 (26.18/16.49) QMQDNVNV...SEesyfklpvvktrimkndnivNLNSVGLEYWKYL 1050- 1078 (28.20/11.03) QEPKNFQIllfSE.................tfgTRDPTCANEFLDL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 93.09| 28| 347| 970| 999| 15 --------------------------------------------------------------------------- 970- 999 (41.12/36.82) SQYkRLKSLEWDSLTlNDINKTTFDSFKEL 1322- 1349 (51.98/35.93) SHY.RGQASDIISIT.DDIWNVSTDFFKHL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 136.72| 47| 717| 784| 831| 17 --------------------------------------------------------------------------- 784- 831 (76.86/49.78) PIENASKEAiTESA.....SPSKILGES.SNYLPLI....LRSINVSTIPNL...YLM...NNL 1490- 1552 (59.87/33.77) PQDHTSGMA.TSSAmaggvGPDTVLHEPeSDIIGIVpkvpLPSFNSPTRLGMkigYLIkdwNDL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.34| 18| 33| 1126| 1143| 18 --------------------------------------------------------------------------- 1126- 1143 (27.64/21.01) FYIQANKKLISLVELIKL 1161- 1178 (30.70/24.41) LFVNFNDSLNSMLQICKI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.32| 20| 35| 256| 276| 20 --------------------------------------------------------------------------- 256- 276 (32.94/22.64) WvKL....IPNLKHLNNQTSP.ISKF 290- 314 (27.38/13.60) W.KLcllqLGKFQELPEAPEPtTSSF --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EELEPAYLDIPKD 2) KFYVDR | 492 604 | 504 609 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab