<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27997
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSEVSLHKLVTKAINQRLPSKSFISLINQFNVKQPIHDNQYIHDLLELDNTPTLKQQRINETKILQIIELSLSSSRQCHQFWKNLGKLDNNVQVRYLTKINKTLLHCSKYDRDLLKQLINTEFIDYSLDYLNKLHDKTFTTSQKQVVNHIIFIVGSIIDNKLVKSEQENILPIQNFIIKLITILKNLKLGKLLSFLLLKSKTILTSDQIEHLSHSKIIKHDLQVQVKTEDNVINYTSIASLSITTLSTEKQSDFYKTKRTFWLIKIIGNFEFDNIANMFVNFMPSGSSPYTLVYEFIQTFITCYDLLKHGDFRRFNLKNFLVTRVPSILGFFKISDEDIQTVVENVFADHTELKNDFTKSLALNRMLPTDKYPNDVTIPELNLRQRFNEKLLNINSEFTSLEESGLIEFMHALPNDLQYSKSHQLELSSIIVEIINDLISGKDFEKLNRILLCIMNNIELLNLIMFNCERAYSVLYQLIDFIDSTQFNIDDDDENFQDTFTYFGVTVLAIILIVHHFKLDYSFSIKNSFILDYINNFYYGLCDNLTNQETDDEEQIVNYNNLLTDWINALFDDNNDGLSDELIKSVNIKQIYKLIPIVYQQAIIATSSGKLGYASLTNGLDYLSQLFLIPSTVSLISWLVKELNLLQKLEADNAHLKVLSEIIKSNTSGNSQEISVLIFKIILNIHGNNIYKTITKFKEWEGIPIAKEIITAVGTYNSETAISKDLNVCETIKLQLLNKGTTLPIDFIIEYIEKNKAQVIWFLIYEVYNFQKSNDEELKYFINLMVYLIIIYSPSTKALQGVGVENGTIGVTDKFVLTIQDHYSSIFDTKLEPKEEDLDMLNDDLFNDLPNTSSTSQKLLKLNSEISFKKSLLGEFSKIKSDNHSLFEKSIKILNDKILDELNKI |
Length | 905 |
Position | Tail |
Organism | Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Debaryomycetaceae> Spathaspora.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.108 |
Instability index | 32.79 |
Isoelectric point | 5.47 |
Molecular weight | 104539.86 |
Publications | PubMed=21788494
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27997
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.99| 22| 112| 117| 160| 1
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135- 160 (28.11/16.72) HDKTFTTSQKQVVNHIIFivgSIIdN
415- 436 (35.88/33.72) NDLQYSKSHQLELSSIIV...EII.N
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 122.09| 34| 39| 268| 301| 2
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268- 301 (63.02/38.28) GNFEFDNIANMFVNFMPSGSSPYTLVYEFIQTFI
310- 343 (59.07/35.45) GDFRRFNLKNFLVTRVPSILGFFKISDEDIQTVV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.08| 22| 32| 527| 548| 3
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527- 548 (40.97/24.71) NSFILDYINNFYYGLCDNLTNQ
560- 581 (39.11/23.22) NNLLTDWINALFDDNNDGLSDE
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.43| 35| 39| 15| 50| 5
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15- 50 (55.19/38.72) NQRLPSKSFISLInQFNVKQPIHDNQYIHDLLELDN
56- 90 (59.25/37.01) QQRINETKILQII.ELSLSSSRQCHQFWKNLGKLDN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 124.54| 40| 221| 643| 682| 7
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643- 682 (62.71/37.15) LNLLQKLEADNAHLKVLSEIIKSNTSGNSQEISVLIFKII
860- 899 (61.83/36.52) LKLNSEISFKKSLLGEFSKIKSDNHSLFEKSIKILNDKIL
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