<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27963

Description Meiotic mRNA stability protein kinase SSN3
SequenceMWRGVGYGGLNSSYPTDRGTGHVAYQSKVRVIERYKVIGFISSGTYGRVYKAVGRQGQKGEFAIKKFKPDKEGEQISYTGISQSAIREMSLCSELKHPNVIRLVEIILEDKCIFMVFEYAEHDLLQIIHHHTQQPRHPIPSQTVKSIMFQLLNGCQYIHSNWVLHRDLKPANIMVTSAGEVKVGDLGLARRFDKPLHSLFSGDKVVVTIWYRAPELILGSRHYTPAIDMWAVGCIFAELLSLRPIFKGEEAKMDSKKTVPFQRNQMQKIVDIMGLPTKERWPLLSSMPEYAQLATLQPPMSSAHHHHRSHHQNLPQGSNLEKWYWSTVSQGAASNASQASQSSGPLVSLGVEGFKLLSSLLEYDPLERLTAAKALQHPFFSTGDRLTAGAFEGLKNEYPHRRVSQDDNDIRTGSLPGTKRSGLPDDSLRPSKRAKE
Length436
PositionKinase
OrganismVerticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137) (Verticillium wilt)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Plectosphaerellaceae> Verticillium.
Aromaticity0.08
Grand average of hydropathy-0.424
Instability index39.65
Isoelectric point9.37
Molecular weight49012.49
Publications
PubMed=21829347

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27963
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.54|      51|      72|     279|     330|       1
---------------------------------------------------------------------------
  279-  330 (94.54/81.58)	ERWPLLSSMPEYAQLATLQPPmSSAHHHHRSHHQNLPQGS..NLEKWY.WSTVSQ
  352-  405 (79.00/61.80)	EGFKLLSSLLEYDPLERLTAA.KALQHPFFSTGDRLTAGAfeGLKNEYpHRRVSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.46|      21|      33|     164|     184|       4
---------------------------------------------------------------------------
  164-  184 (35.64/27.40)	LHRDLKPANIMVT...SAGEVKVG
  196-  219 (29.82/21.76)	LHSLFSGDKVVVTiwyRAPELILG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27963 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFEGLKNEYPHRRVSQDDNDIRTGSLPGTKRSGLPDDSLRPSKRAKE
390
436










Molecular Recognition Features






MoRF SequenceStartStop




1) FAIKKF
2) LEKWYWS
3) SLRPSKRAKE
62
320
427
67
326
436