<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27956

Description Uncharacterized protein
SequenceMAANYWESTQRKHWQFTKDELAALRQRLDDEDPGLVHMFPLPQLRHLNIYFNQQINRLGKRLGVRQQAMATAQVYLKRFYTRTPIRQTNPYLVLTTALYLACKMEECPQHIRLLSQEARSLWPSDMHGHDASRVGECEFSLISEMNSQLIVHQPYRTLLALQDTFALTHDETSLAWMIINDHYMTDLPLLHPPHVVALTAVLLALVLRPSSNPSGAGGAGAGGGAATAAAAAGATGAAGGVAMAATALAQAQAQAQARAAAATSAGGSGAATQPGFSSQGSQQAQTAGFSQGGSQGDGQQAAEPKKATDPRLAKVQRFAAWLADSSIDIEAMVDCTQELISFYECHEQYNDKHTREQISRFIKARGLDK
Length369
PositionKinase
OrganismThielavia terrestris (strain ATCC 38088 / NRRL 8126) (Acremonium alabamense)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Thermothielavioides> Thermothielavioides terrestris.
Aromaticity0.07
Grand average of hydropathy-0.292
Instability index50.38
Isoelectric point6.89
Molecular weight40069.78
Publications
PubMed=21964414

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27956
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.58|      20|      25|     216|     240|       1
---------------------------------------------------------------------------
  216-  235 (35.41/12.69)	AGGAGAGGGAATAAAAAGAT
  244-  263 (31.17/17.13)	AATALAQAQAQAQARAAAAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.73|      23|      25|     139|     161|       2
---------------------------------------------------------------------------
  139-  161 (39.62/27.04)	FSLISEMNS..QLIVHQPYRTLLAL
  165-  189 (39.11/26.61)	FALTHDETSlaWMIINDHYMTDLPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.45|      10|      25|     264|     273|       3
---------------------------------------------------------------------------
  264-  273 (18.55/ 8.73)	SAGGS.GAATQ
  290-  300 (15.90/ 6.61)	SQGGSqGDGQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27956 with CycC domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAATSAGGSGAATQPGFSSQGSQQAQTAGFSQGGSQGDGQQAAEPKKATDP
259
310










Molecular Recognition Features






MoRF SequenceStartStop




NANANA